Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0747
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   1.0  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    28   1.3  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   4.1  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   7.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   7.2  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   9.5  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 217 LTASSHTQTWIKTRNSSPSLVASNHKSTNVPRNKSEM 327
           +T S H  T  K   SS + ++SN +   +PR KS M
Sbjct: 144 VTTSKHVATITKPSTSSIARMSSNARIAAIPRAKSSM 180


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 222 GILSYPNLDKNKKFITFVGGFKSQ--IHKRTEEQIRDAFRTVPNSYLIMLDHSLYTN-NK 392
           G+ +  N+DKN   I ++G    Q     R +  +R+    + +SYL  +D  +  +  K
Sbjct: 794 GLFAMENIDKNDMVIEYIGEIIRQRVADNREKNYVREG---IGDSYLFRIDEDVIVDATK 850

Query: 393 QGN 401
           +GN
Sbjct: 851 KGN 853


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -2

Query: 382 VYRE*SNMIR*LFGTVLKASLICSSVRLWICDLKPPTKV----MNFLFLSKFG 236
           VY+  S++I+ +F  ++ A   C SV ++  DLKP   +    +N ++L+ FG
Sbjct: 112 VYQGNSHLIKTVFLQLISAVEHCHSVGIYHRDLKPENIMVGNDVNTVYLADFG 164


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +3

Query: 408 SYERSVKYVHYIGKALGQMLVKIRDGGVTT----QKMHCIGHSLGAQILGHA 551
           +Y ++ K V ++GK LG+ L+ I   G  +      +  + HSLG  +  +A
Sbjct: 286 NYCQTEKGVRWLGKRLGEWLLDITGWGSASFPRYSHISVVAHSLGGLVQTYA 337


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 115 HFNSPERRANWNGPNFSRSPRPQPDTQTKKHTAKQK 8
           H N    R+ W+  ++S  P P P  +   H+ K +
Sbjct: 353 HLNDESSRSRWSNISYS-PPPPPPPPELLNHSPKSR 387


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 119 SQQKFEFGRQRNRCIFLRLFQERGK 193
           S  K+   +++NR  FL++F+ER K
Sbjct: 107 SVSKYSHLQEKNRTSFLQVFKERSK 131


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 206 DGKRFYLVLGKVVEIYI 156
           D  RFYL LGK+ E YI
Sbjct: 677 DANRFYLHLGKLSENYI 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,546
Number of Sequences: 5004
Number of extensions: 63964
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)