Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0747
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0490 + 19639226-19639228,19639718-19640133,19640793-196408... 29 3.2
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172 29 3.2
09_06_0322 - 22329897-22330078,22330569-22331928 29 4.2
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 28 5.6
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 28 5.6
10_01_0354 - 3887790-3890204 28 7.4
07_01_0234 + 1715338-1718233,1718351-1718760 28 7.4
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195... 28 7.4
>12_02_0490 +
19639226-19639228,19639718-19640133,19640793-19640846,
19640983-19641045,19641122-19641365,19641634-19641706,
19641911-19641939
Length = 293
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 93 LRSGLLKCNHNRNLNLDVSGIDVYFYDFS-KNEVKTFTIDEAANGILSYPNLDKNKKFIT 269
+ S +L +RN+N + SG ++FY FS + + T+ E + L+K K
Sbjct: 2 MNSTILDVFKSRNINGEFSGTVIHFYSFSYEGKDDTWYKGEIFPVMSLKTPLEKGKGIRV 61
Query: 270 FVGGFKSQIHKRTEEQIRD 326
+ F ++ K +E I D
Sbjct: 62 SIWTFPAEKEKELKEMILD 80
>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
Length = 618
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 202 PSMKQLTASSHTQTWIKTRNSSPSLVASNHKSTNVPRNKSEML--SELYRTVI*SCWIIL 375
PS K + S H+ KTR SPS S K R+KS ++ SE+ + + W I
Sbjct: 164 PSEKMMLDSLHSLVDAKTRPKSPSFFHSGTKMRKA-RSKSHIITQSEILKLISPETWEI- 221
Query: 376 YTPTISKAIK*ATRDL 423
+P +S +K +T +L
Sbjct: 222 SSPGVS-PLKKSTAEL 236
>09_06_0322 - 22329897-22330078,22330569-22331928
Length = 513
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1
Query: 142 TSAESMYISTTFPRTR*KRLPSMKQLTASSHTQTWIKTR----NSSPSLVASNHKSTNV 306
+S++ YI T F R + K SHTQ W T + P L +H++TNV
Sbjct: 180 SSSKQHYIVTAFSVNRYRPPGEYKLHLYHSHTQQWTTTHFNLAATMPDLSPFHHRTTNV 238
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -2
Query: 622 KGPAGSKAXILCILSKPSLMNSSPACPNICAPRLWPIQCIFCVVTPP--SRILTNICP 455
K P+GS A + SKP+L C ++ +QC ++L+N+CP
Sbjct: 761 KAPSGSSAAKANLSSKPNLTELYLMCASMLGTDNGDVQCNISAEEQDRIEKVLSNLCP 818
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 498 QKMHCIGHSLGAQI-LGHAGDEFMRLGFER 584
QKMH +GHSLG I L D+ ++G R
Sbjct: 227 QKMHYVGHSLGTLIALAALSDQQQQIGMLR 256
>10_01_0354 - 3887790-3890204
Length = 804
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 354 LIMLDHSLYTNNKQGNKMSYERSVKYVHYIGKALGQMLVKIRDGGVTTQKMHCIGHSLGA 533
+ + H L +NK ++ + IG +L Q + DG + K+H I H LG
Sbjct: 448 MFWMAHGLLNSNKLSEEIDVGNQY-IIELIGSSLFQDSLITFDGSMPHCKLHDIVHDLGR 506
Query: 534 QIL 542
+L
Sbjct: 507 YVL 509
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +3
Query: 309 EEQIRDAFRTVPNSYLIMLDHSLYTNNKQGNKMSYERSVKYVHYIGKALGQMLVKIRDGG 488
++ I D+FR + N + +LD L +NN G SY ++ Y+ + + + ++ +GG
Sbjct: 641 DDSIPDSFRKLSN--IAILD--LSSNNLSGRIPSYFANLTYLTNVNFSFNNLQGQVPEGG 696
Query: 489 V 491
V
Sbjct: 697 V 697
>04_04_0059 +
22418795-22418908,22419064-22419202,22419437-22419525,
22420428-22420690,22420793-22420883,22420966-22421325
Length = 351
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 288 SQIHKRTEEQIRDAFRTVPNSYLIMLDHSLYTNNKQGNK---MSYERSVKYVHYIGKALG 458
S I + + ++ D FR + + + LY N G + +S KY+H IG+
Sbjct: 170 SVIERFSLKEHDDIFRDLVTAGCTLCGSPLYPKNLHGENTYPIDCPKSPKYLHVIGQIYK 229
Query: 459 QMLVKIRD 482
++ +RD
Sbjct: 230 PFMIYVRD 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,323
Number of Sequences: 37544
Number of extensions: 386268
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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