Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0747
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 43 2e-04
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 33 0.15
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 31 0.62
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_12088| Best HMM Match : EGF (HMM E-Value=0.16) 29 3.3
SB_54660| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24) 28 5.7
SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 393 QGNKMSYERSVKYVHYIGKALGQMLVKIRD--GGVTTQKMHCIGHSLGAQILGHAGDEFM 566
+G K+ Y R+V +G + + I G H IG SLGA I G+ G
Sbjct: 134 RGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFHSIGFSLGAHISGYVGQRLK 193
Query: 567 RLGFERIQRIXALDPAGPLLFR 632
R+G + RI LDPA L+F+
Sbjct: 194 RIG-RHLDRITGLDPA-TLMFK 213
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 441 IGKALGQMLVKI-RDGGVTTQKMHCIGHSLGAQILGHAGD 557
+G L +++ I R +++H IGHSLGA + G+AG+
Sbjct: 81 VGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGE 120
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 297 HKRTEEQIRDAFRTVPNSYLIMLDHSLYTN 386
HK+ Q DAF + +S+L LD+SL N
Sbjct: 331 HKKIHNQFTDAFEVMKSSFLTFLDNSLNAN 360
>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +1
Query: 196 RLPSMKQLTASSHTQTWIKTR------NSSPSLVASNHKSTNVPRNKSEMLSEL 339
R PS++ L AS QTW + R +SS +L+ ++ N+P KS M EL
Sbjct: 324 RCPSVRPLKASYDNQTWQQPRGHACLADSSSALLTPQIRTKNLPPKKSTMNLEL 377
>SB_895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 165 FYDFSKNEVKTFTIDEAANGILSYPNLDKNKKF-ITFVGGFKSQIHKRTEEQIRDAFRTV 341
F DFS +V + +A G+L NL+K+K I F + + T+E+ FR +
Sbjct: 146 FQDFSSRDVFKRSHAKANKGLLFSGNLNKSKNLDIPFEKYNRFDLESLTDEECLSEFRFI 205
Query: 342 PNSYLIMLDHSL 377
N L L+ +L
Sbjct: 206 KND-LYRLNEAL 216
>SB_12088| Best HMM Match : EGF (HMM E-Value=0.16)
Length = 343
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 330 FRTVPNSYLIMLDHSLYTNNKQGNKMSYERSVKYVHYIGKALG-QMLVKIRDGGVTTQKM 506
F P+ Y + LYTN + + Y + + HY KA G +L +GG T
Sbjct: 53 FAVRPDEYGMHTCEVLYTNRCSNDSVKYHENKDFDHYNKKANGCNLLNPCLNGGTYTGNF 112
Query: 507 HC 512
C
Sbjct: 113 VC 114
>SB_54660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 372 SLYTNNKQGNKMSYERSVKYVHYIGKALGQMLVKIRDGGVTTQKMHCIGH 521
S+Y + + + Y V Y Y G ++ + LVK GGV +H + H
Sbjct: 28 SVYGSQRSSLVIKYSEEVYYAEYFGTSIDEYLVKQDLGGVW---IHMLSH 74
>SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)
Length = 683
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Frame = +3
Query: 123 NRNLNLDVSGIDVYFYDFSKNEVKTFTIDEAANGILSYPNLDKNKKFITFVGGFKSQIHK 302
N++ N + G +FYD +K F + + N L D+ + + G + ++
Sbjct: 118 NKHQNTTLEGAK-HFYDNTK---VVFALGRSGNKNLDLFIEDEAELYSDIFRGVTLESYR 173
Query: 303 RTEEQIRDAFR---TVPNSYLIMLDHSLYTNNKQGNKMSYERSVKYVHYIG 446
++ DAFR Y+I +DH +Y N + E ++ + Y G
Sbjct: 174 NLVFKVWDAFRWSIIYQPKYIIKVDHDVYVNLPKFFSWIREDNIPHFLYAG 224
>SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 14 FGRVFFCLRVWLGTRGPREIRTVPIGSAF 100
F +F L +W+ RG ++ TVP G F
Sbjct: 670 FSFLFGTLYIWVAGRGGLQVTTVPFGDEF 698
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,531,423
Number of Sequences: 59808
Number of extensions: 471740
Number of successful extensions: 1368
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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