Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0747
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.63 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -1

Query: 284 EATNEGDEFLVFIQVWV*EDAVSCFIDGKRFYLVLGKVVEIYIDSA 147
           +   + + F   +++WV    V C ID +   ++L     +YID +
Sbjct: 69  QVLKKAENFKDVVKIWVGPKLVICLIDPRDVEIILSS--NVYIDKS 112


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 162 YFYDFSKNEVKTFTIDEAANGILSYPNLDKNKK 260
           Y +D  +   KTF   E  NG+ S  N+  NKK
Sbjct: 71  YPFDVDRWRDKTFVTIERNNGVPSSLNVVTNKK 103


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +3

Query: 264 ITFVGGFKSQIHKRTEEQIRDAFRTVPNSYLIMLDHSLYTNNKQGNKMSYERSV-KYVHY 440
           + ++  FK+++  +     R +F+  P +Y       LY +     +++   ++  Y+ +
Sbjct: 198 VMYISVFKAEVGSKLRP--RSSFQGPPFTYRYGFSFLLYVSGFITTEVAGTYAIFLYISW 255

Query: 441 IGKALGQMLVKIRD-GGVTTQKMHCIGHSLGAQILGHAG 554
             K L +   + ++ GGV     H + H+    ILGH+G
Sbjct: 256 HQKELVRRDSRRKNYGGVYHLDNHHVHHANHHAILGHSG 294


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 324 DAFRTVPNSYLIMLDHSLYTNNKQG 398
           D+F   PN  L  L  +L  N+KQG
Sbjct: 665 DSFIEAPNKTLPSLPSTLTKNSKQG 689


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = -3

Query: 114 ISIAQNAEPIGTVRISLGPR-----VPNQTRKQKN 25
           I+   N    GTVRI +GP+     +P   R+QKN
Sbjct: 489 INNRNNTSMKGTVRIFIGPKEDERGLPFTFREQKN 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,647
Number of Sequences: 438
Number of extensions: 4546
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)