Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0747
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57670.1 68418.m07207 protein kinase family protein contains ...    33   0.16 
At2g23200.1 68415.m02771 protein kinase family protein contains ...    32   0.29 
At1g55070.1 68414.m06290 F-box family protein contains Pfam prof...    32   0.29 
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64...    29   2.0  
At4g31440.1 68417.m04468 hypothetical protein                          29   3.5  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    28   4.7  

>At5g57670.1 68418.m07207 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 416

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = -2

Query: 277 PTKVMNFLF---LSKFGYERMPLAASSMVNVFTSFLEKS*KYTSIPLTSKFKFLL*LHFN 107
           P  V+N L    LS  G +      S + + F S  +K  K+ SI   S +KF+  L  N
Sbjct: 13  PRSVLNTLSRDSLSSSGDDASSFNGSMVSSSFASPSDKP-KHKSI---SPYKFISSLIMN 68

Query: 106 SPERRANWNGPNFSRSPRPQP 44
           SP R+  W G      P+PQP
Sbjct: 69  SPLRK--WRGSETKNKPKPQP 87


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 238 QTWIKTRNSSPSLVASNHKSTNVPRNKSEMLSELYRTV 351
           QT++   NSS + V+  +K T V  ++S +  E+YRTV
Sbjct: 54  QTFVGDTNSSTNSVSFTNKGTEVINDQSSVAPEIYRTV 91


>At1g55070.1 68414.m06290 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 393

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +1

Query: 229 SHTQTWIKTRNSSPSLVASNHKSTNVPRNKSEMLSELYRTV 351
           S+T T  +  + + SLVA+ H  T++PR+ S++LS ++  V
Sbjct: 97  SYTSTQPENPDENSSLVATAHHHTDIPRDFSQILSSVHGLV 137


>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
           Lysosomal acid lipase/cholesteryl ester hydrolase
           precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
           Pfam profile PF04083: ab-hydrolase associated lipase
           region
          Length = 418

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 486 GVTTQKMHCIGHSLGAQILGHAGDEFMRLGF-ERIQRIXALDPAGPLLFRTVFI 644
           G+T QK+H +GHSLG  ++G A   F   G  ++++    L P   L   T  I
Sbjct: 178 GLTGQKIHYLGHSLGT-LIGFA--SFSEKGLVDQVRSAAMLSPVAYLSHMTTVI 228


>At4g31440.1 68417.m04468 hypothetical protein
          Length = 379

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 402 KMSYERSVKYVHYIGKALGQMLVK 473
           K+  ERS +Y +Y+G+ L Q L K
Sbjct: 21  KVGVERSTRYFYYLGRFLSQKLTK 44


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 276 GGFKSQIHKRT--EEQIRDAFRTVPNSYLIMLDHSLYTNNKQGNKMSYERSVKYV 434
           G F   +  RT  E  I DA  T  N+   +  +  YT NK+ + ++Y++ V  V
Sbjct: 27  GIFTGCLRNRTSLENPITDAIFTSRNTTTFLSSYVSYTKNKRYSSLNYQKLVAIV 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,366
Number of Sequences: 28952
Number of extensions: 323581
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)