Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0744
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8N930 Cluster: CDNA FLJ38464 fis, clone FEBRA2021171; ...    33   3.8  
UniRef50_Q0UY60 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  
UniRef50_Q5NAR3 Cluster: Putative uncharacterized protein P0699D...    31   8.8  

>UniRef50_Q8N930 Cluster: CDNA FLJ38464 fis, clone FEBRA2021171;
           n=1; Homo sapiens|Rep: CDNA FLJ38464 fis, clone
           FEBRA2021171 - Homo sapiens (Human)
          Length = 215

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 269 SSVNXRQAIPWCRCRSCCRYLPVSSPFRGSSDPRWA 162
           SSV  R+A P CRC S C   P   P   SS   WA
Sbjct: 23  SSVKWRRACP-CRCHSHCWRWPYLQPVPASSSSSWA 57


>UniRef50_Q0UY60 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 839

 Score = 31.9 bits (69), Expect = 6.6
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LVT+P    SA   AGR GRTGP    R
Sbjct: 500 LVTVPCSRASAEQRAGRAGRTGPGMAFR 527


>UniRef50_Q5NAR3 Cluster: Putative uncharacterized protein
           P0699D11.6; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0699D11.6 - Oryza sativa subsp. japonica (Rice)
          Length = 172

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 20/47 (42%), Positives = 21/47 (44%)
 Frame = -2

Query: 287 AVHQRTSSVNXRQAIPWCRCRSCCRYLPVSSPFRGSSDPRWACSATA 147
           AV   T+  N RQ  P  RCRS    L  SS  RGSS     C   A
Sbjct: 67  AVRPLTNHPNIRQRAPQPRCRSSSPSLSSSSLSRGSSGKPARCGTVA 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,759,251
Number of Sequences: 1657284
Number of extensions: 4592860
Number of successful extensions: 11960
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11956
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)