Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0744
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    30   0.14 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    29   0.44 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   0.76 
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   5.4  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   5.4  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    24   9.4  

>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 66  CFNRIILSDRVLVTLPADHVSALHYAGRCGRTGPSRVRR 182
           CF+  +  D ++VT P     A   +GR GRTGP +  R
Sbjct: 810 CFDPKLGMDSLIVT-PISQAQARQRSGRAGRTGPGKCYR 847


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV++P    SA   AGR GR GP +  R
Sbjct: 728 LVSVPCSRASADQRAGRAGRVGPGKCFR 755


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 54  CCFECFNRIILSDRVLVTLPADHVSALHYAGRCGRTGP 167
           C  + +N  +  D + VT P    +A   AGR GRTGP
Sbjct: 786 CKLKMYNSKLGIDTLQVT-PISQANANQRAGRAGRTGP 822


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 69  FNRIILSDRVLVTLPADHVSALHYAGRCGRTGPSRVRR 182
           +N  I  + +LV+ P    SA   AGR GRT P +  R
Sbjct: 384 YNPRIRVESLLVS-PISKASAQQRAGRAGRTRPGKCFR 420


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 378 PTGCLXHNXASLPLELXVFVSELIGSFLISGCTSENFFS 262
           P   L H  +S+P     + S    +FLISG  S+   S
Sbjct: 316 PNATLEHELSSIPWTGLCYESGFANTFLISGIHSKEAIS 354


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           L+ +P    SA+  +GR GRT   +V R
Sbjct: 337 LINVPISKSSAIQRSGRAGRTMRGKVFR 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,229
Number of Sequences: 5004
Number of extensions: 18367
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)