Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0744
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0572 + 11667455-11670783,11672026-11672419                       30   0.99 
06_02_0263 - 13566621-13569875                                         29   1.3  
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229...    29   1.7  
06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467...    28   4.0  
08_02_0259 - 14974526-14974572,14974670-14974742,14974829-149748...    27   5.3  
05_04_0174 - 18728199-18731411                                         27   5.3  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    27   7.0  
07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018     27   9.2  

>02_02_0572 + 11667455-11670783,11672026-11672419
          Length = 1240

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV  P    SA   AGR GRTGP +  R
Sbjct: 896 LVITPISQASAKQRAGRAGRTGPGKCYR 923


>06_02_0263 - 13566621-13569875
          Length = 1084

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           L+  P    SA   AGR GRTGP +  R
Sbjct: 740 LIITPISQASAKQRAGRAGRTGPGKCYR 767


>11_04_0365 -
           16818468-16818514,16818619-16821706,16822860-16822919,
           16823595-16823954
          Length = 1184

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 60  FECFNRIILSD-RVLVTLPADHVSALHY 140
           F C + +I+SD   L +LP+D  S+LHY
Sbjct: 875 FPCLSSLIISDCNRLSSLPSDRFSSLHY 902


>06_01_0645 +
           4670966-4671021,4671128-4671177,4671270-4671350,
           4671862-4672078,4673220-4673607,4673830-4674033,
           4675174-4675334,4675401-4675586,4675732-4675963,
           4676530-4676732,4677074-4677208,4677367-4677550
          Length = 698

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           L+ +P     AL  +GR GR GP +  R
Sbjct: 372 LIIIPVSKAQALQRSGRAGREGPGKCYR 399


>08_02_0259 -
           14974526-14974572,14974670-14974742,14974829-14974891,
           14975030-14975097,14975172-14975295,14976434-14976493,
           14976744-14976806,14976902-14977942,14978027-14978093,
           14978188-14978303,14978454-14978540,14978749-14978838,
           14979128-14979214,14979366-14979428,14979509-14979566,
           14980174-14980231,14980349-14980416,14980508-14980587,
           14981084-14981147,14981321-14981392,14981517-14981576,
           14982344-14982398,14982487-14982520,14983845-14983931,
           14984036-14984122,14984211-14984408,14984509-14984639,
           14984739-14984838
          Length = 1066

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 21  YVV*DGTCVIVCCFECFNRIILSDRVLVTLPADHVSALHYAGRCGRTGPSRVRR 182
           YVV  G C I    + +N     + +L+  P    SA   AGR GRTGP +  R
Sbjct: 705 YVVDPGFCKI----KSYNPRTGMESLLIN-PISKASANQRAGRSGRTGPGKCFR 753


>05_04_0174 - 18728199-18731411
          Length = 1070

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           L+  P    SA   AGR GRTGP    R
Sbjct: 717 LLVAPVSRASAEQRAGRSGRTGPGECFR 744


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 60  NNIRSHTSRPTLRTRPVP 7
           N +R HTS P+ R  PVP
Sbjct: 446 NGVREHTSEPSKRDDPVP 463


>07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018
          Length = 671

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 95  SVTQDDSVEALETTYDHTRPVLHYVHGP 12
           ++T  D + A +  Y H +P LHY   P
Sbjct: 392 AITNRDGLTAADLAYRHLQPGLHYFLNP 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,670
Number of Sequences: 37544
Number of extensions: 134653
Number of successful extensions: 375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)