Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0744
         (450 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK095783-1|BAC04626.1|  215|Homo sapiens protein ( Homo sapiens ...    33   0.60 
D50487-1|BAA09078.1| 1220|Homo sapiens RNA helicase protein.           29   9.7  
BC047327-1|AAH47327.2| 1220|Homo sapiens DEAH (Asp-Glu-Ala-His) ...    29   9.7  
BC044586-1|AAH44586.2| 1220|Homo sapiens DEAH (Asp-Glu-Ala-His) ...    29   9.7  

>AK095783-1|BAC04626.1|  215|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38464 fis, clone FEBRA2021171. ).
          Length = 215

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -2

Query: 269 SSVNXRQAIPWCRCRSCCRYLPVSSPFRGSSDPRWA 162
           SSV  R+A P CRC S C   P   P   SS   WA
Sbjct: 23  SSVKWRRACP-CRCHSHCWRWPYLQPVPASSSSSWA 57


>D50487-1|BAA09078.1| 1220|Homo sapiens RNA helicase protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV  P     A   AGR GRTGP +  R
Sbjct: 874 LVVTPISQAQAKQRAGRAGRTGPGKCYR 901


>BC047327-1|AAH47327.2| 1220|Homo sapiens DEAH (Asp-Glu-Ala-His) box
           polypeptide 8 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV  P     A   AGR GRTGP +  R
Sbjct: 874 LVVTPISQAQAKQRAGRAGRTGPGKCYR 901


>BC044586-1|AAH44586.2| 1220|Homo sapiens DEAH (Asp-Glu-Ala-His) box
           polypeptide 8 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV  P     A   AGR GRTGP +  R
Sbjct: 874 LVVTPISQAQAKQRAGRAGRTGPGKCYR 901


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,638,740
Number of Sequences: 237096
Number of extensions: 720602
Number of successful extensions: 1674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)