Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0744
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    28   3.6  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    28   3.6  
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    27   4.8  
U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV  P    +A   +GR GRTGP +  R
Sbjct: 849 LVVTPISQAAAKQRSGRAGRTGPGKCYR 876


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV  P    +A   +GR GRTGP +  R
Sbjct: 849 LVVTPISQAAAKQRSGRAGRTGPGKCYR 876


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 54  CCFECFNRIILSDRVLVTLPADHVSALHYAGRCGRTGPSRVRR 182
           C  + +N  I  D + +  P    SA    GR GRTGP +  R
Sbjct: 736 CKMKVYNPRIGMDALSI-FPVSQASANQRTGRAGRTGPGQCYR 777


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 54  CCFECFNRIILSDRVLVTLPADHVSALHYAGRCGRTGPSRVRR 182
           C  + +N  I  D + +  P    SA    GR GRTGP +  R
Sbjct: 736 CKMKVYNPRIGMDALSI-FPVSQASANQRTGRAGRTGPGQCYR 777


>U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical
           protein F56D2.6b protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           L+  P    SA+  AGR GRT P +  R
Sbjct: 400 LLVCPISKASAMQRAGRAGRTKPGKCFR 427


>U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical
           protein F56D2.6a protein.
          Length = 739

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           L+  P    SA+  AGR GRT P +  R
Sbjct: 400 LLVCPISKASAMQRAGRAGRTKPGKCFR 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,848,543
Number of Sequences: 27780
Number of extensions: 108913
Number of successful extensions: 250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)