Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0744
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.7  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        21   8.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -3

Query: 418 PGFKWIRLERLEFADGLSAA*XCLITARVXSVCIGANRF 302
           P   W+ +  L+ +  L      L  A    +CIG  RF
Sbjct: 307 PSNSWVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRF 345


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -3

Query: 418 PGFKWIRLERLEFADGLSAA*XCLITARVXSVCIGANRF 302
           P   W+ +  L+ +  L      L  A    +CIG  RF
Sbjct: 275 PSNSWVAINELQDSFWLEQYSWALFKAMSHMLCIGYGRF 313


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 74 VEALETTYDHTRPVLHYVH 18
          ++    + D ++PV+ YVH
Sbjct: 7  LDVYTNSLDQSKPVMFYVH 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,757
Number of Sequences: 438
Number of extensions: 1322
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)