Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0744
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1...    30   0.83 
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si...    30   0.83 
At4g11390.1 68417.m01837 DC1 domain-containing protein contains ...    29   1.5  

>At4g16680.1 68417.m02519 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 883

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = +3

Query: 21  YVV*DGTCVIVCCFECFNRIILSDRVLVTLPADHVSALHYAGRCGRTGPSRVRR 182
           YV+  G C I      +N     + +LVT P    SA   AGR GRTGP +  R
Sbjct: 510 YVIDPGYCKI----NSYNPRTGMESLLVT-PISKASAAQRAGRSGRTGPGKCFR 558


>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00575: S1 RNA binding domain
          Length = 1168

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 99  LVTLPADHVSALHYAGRCGRTGPSRVRR 182
           LV  P    SA   AGR GRTGP +  R
Sbjct: 824 LVITPISQASAKQRAGRAGRTGPGKCYR 851


>At4g11390.1 68417.m01837 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 514

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 263 VNXRQAIPWCR-CRSCCRYLPVSSPFRGSSDPRWACS 156
           +N   + P+CR C S C Y P+S    G+SDP + CS
Sbjct: 386 LNNSVSRPFCRVCESHCMY-PISLKMLGTSDP-YICS 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,477,854
Number of Sequences: 28952
Number of extensions: 102205
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)