Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0742
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   6.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.0  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 110 SGESARRGTGTPTGSASITSYARPP 36
           S  +A R   TPTG  + ++ A PP
Sbjct: 210 SPAAAPRSVATPTGIPTPSTSASPP 234



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 298 SCRQARREPQEDDRASART*GTSS 369
           SC +    P+ED+R  A + G  S
Sbjct: 32  SCLKTTPPPEEDNRGCAASVGEGS 55



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 61  LAEPVGVPVPRRADSP 108
           +A P G+P P  + SP
Sbjct: 218 VATPTGIPTPSTSASP 233


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 367 NLFLMFAQTLDHLLEVLVALVGSCG 293
           NL+L     +  L++  + LV  CG
Sbjct: 266 NLYLKHKLEISSLVQTAITLVAMCG 290


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 270 YTSAVCCSRVNLVFSTPSR*SLSNGGHLTSFQATSP 163
           +T + C +R+NL  S+P     +   H T +    P
Sbjct: 53  FTGSNCQNRINLCDSSPCLNGATCQDHTTHYTCHCP 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,265
Number of Sequences: 336
Number of extensions: 1443
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)