Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0742
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 35 0.010
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 33 0.042
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 33 0.042
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 32 0.074
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 30 0.30
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 30 0.30
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.39
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.52
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 28 1.2
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 27 1.6
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 2.8
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 2.8
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 3.7
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 26 3.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.7
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera... 26 4.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 6.4
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 6.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 6.4
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 8.5
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 8.5
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 34.7 bits (76), Expect = 0.010
Identities = 31/100 (31%), Positives = 47/100 (47%)
Frame = +2
Query: 227 EKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQ 406
E+ + E+Q E K + ++ AA K E K ER+R E+Q RK +E+ Q+
Sbjct: 96 ERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRK-----EERDQK 150
Query: 407 LESAIXEKLQQAADRRLLIEAEQXEKLRNHNIKLAEVRSA 526
L E+ Q+ ++L + Q KL N K E R A
Sbjct: 151 LRE--KEEAQRLRQEQILNKERQQLKLNNFFTKGVEKRIA 188
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 32.7 bits (71), Expect = 0.042
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +2
Query: 230 KTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQ- 406
++ L ++ T + K ++ ++R +KKM E+ E++ ++ ++KF +
Sbjct: 120 QSSLNTKENTPQQPKKSRNRQKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKI 179
Query: 407 LESAIXEKLQQAADRRLLIEAEQXEKLRNHNIKL 508
LE A + AD L + + +HN+KL
Sbjct: 180 LEEAGLVAVDIPADGNCLFASISHQLNYHHNVKL 213
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/81 (20%), Positives = 41/81 (50%)
Frame = +2
Query: 233 TRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLE 412
T+ T+ Q K +E+ ++ ++ E K+ ++ +E +K + Q+K Q+E
Sbjct: 10 TQTTIPTQQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQME 69
Query: 413 SAIXEKLQQAADRRLLIEAEQ 475
+ + +K A +R+ L + ++
Sbjct: 70 ADLSQK--HATERQKLDKGDE 88
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 32.7 bits (71), Expect = 0.042
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 106 PEKTPSVEEIQEKLKAAEERRRSLEASKMAAIAQGSS*GR*EDQVDPG-TADRGSVQG 276
PE TP+VE++ E L E R SL+ +K AA A S +Q+ P +AD S G
Sbjct: 301 PESTPAVEKVSENL--GSETRESLQGAKPAAGAHSSDNAL--EQIKPSYSADPSSSTG 354
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 31.9 bits (69), Expect = 0.074
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +2
Query: 194 PPLLKDHLEGVEKTRLTLEQ-------QTAEVYKAIEDKMTTAADKRDENLKKMIERLRE 352
P L K+H E + + ++Q +T ++A E+KM D + L + ER+R
Sbjct: 303 PKLKKEHYERLNNEKRAIQQKITQMTNETESFFQAKEEKMIETRDALNSELSEYHERIRA 362
Query: 353 HEEQVRKVRA 382
E Q+ +++
Sbjct: 363 LETQIESLKS 372
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 29.9 bits (64), Expect = 0.30
Identities = 25/125 (20%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Frame = +2
Query: 209 DHLEGVEKTRLTLEQQTAEVY--KAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRA 382
DH E K + E A +Y K K +KR + +M + +++HEE+ R
Sbjct: 19 DHEERKRK-KAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRG 77
Query: 383 GNQEKFQQLESAIXEKLQQAADRRL--LIEAEQXEKLRNHNIKLAEVRSAATAKVXEXTK 556
+ + + + + ++ Q++ + L ++ ++ EK +++ L +VR A ++ + +
Sbjct: 78 SDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLPQVRGVAEEEMFKVIR 137
Query: 557 DIENK 571
++K
Sbjct: 138 TGKSK 142
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 EVYKAIED-KMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQ 403
E+ KA+E+ K+T DENLKK I+ L E+ +K+ G QE+++
Sbjct: 35 ELVKALENVKLTKFTGDGDENLKKNIKVLVPVNEKPQKL-DGKQEEYE 81
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 0.39
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +2
Query: 308 KRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIXEKLQQAADRRLLIEAEQXEKL 487
++DE K+ ++ R+ EQV + +EK+ +LE + +LQ A R ++A+ +
Sbjct: 436 EKDEASKERLKAARKEAEQVEEETRPIREKY-ELEKSRGSELQDAKRRLDELKAKAEDAE 494
Query: 488 RNHNIKLA 511
R ++ LA
Sbjct: 495 RRNDFTLA 502
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.1 bits (62), Expect = 0.52
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 203 LKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRA 382
+K+ +KTR + EQQT + IE+++ +K ++ LKK IE L + + +
Sbjct: 417 VKNDCTSEKKTRQSYEQQTVK----IEEQLKFLLNK-EKKLKKSIEALSFEKSEAENSLS 471
Query: 383 GNQEKFQQLESAIXE---KLQQ 439
+ Q+L S I + +LQQ
Sbjct: 472 SHDIDSQKLNSEIADLSLRLQQ 493
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 221 GVEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKM--IERLREHEEQVRKVRAGNQE 394
G K + + + E+Y+ E+K +K D ++K IE+ ++ EQ R + + +
Sbjct: 64 GERKRKFSKKSHLQELYERSEEKRRIQQEKEDAKVQKRLEIEKKQKDREQTRNMLSKKTK 123
Query: 395 KFQQL 409
+ Q +
Sbjct: 124 RGQPI 128
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 206 KDHLEGVEKTRLTLEQQTAEVYKA-IEDKMTTAADKRDENLKKMIERLREHEEQVRKVRA 382
K LE R LE++ E + ++D+ + E KK ER+R EEQ K +
Sbjct: 105 KQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQ--KHKE 162
Query: 383 GNQEKFQQLESAIXEKLQQAADRRL 457
Q + +Q + K ++A ++R+
Sbjct: 163 NEQRRLKQEQIDAKRKEEEAREKRM 187
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 100 DSPEKTPSVEEIQEKLKAAE---ERRRSLEASKMAAIA 204
D PE T SVE+++E + A RR A K AA++
Sbjct: 234 DKPESTSSVEKVKEGNRPASIHFHTRRKFLAQKRAAVS 271
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 248 EQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQ 364
E + AE K I D+ ++K DE L+ + ERLRE EE+
Sbjct: 169 ENRRAESNK-IMDETIQKSEKIDELLQYIEERLRELEEE 206
>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 123
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 242 TLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRA--GNQEKFQQLES 415
TLE+ ++ + ++ A+ K DEN K + + E+ +Q K A +QQ
Sbjct: 29 TLEEAPEKISQTVKKATGKASKKIDENKDKSPQEMAENAKQSVKQTAKDAKDTDYQQKAK 88
Query: 416 AIXEKLQQAADRR 454
+K+++ +R
Sbjct: 89 DAGKKIKEEFSQR 101
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 260 AEVYKAIEDKMTTAADKRDEN---LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIXEK 430
AE + + K + ++ N L+KM+E R EE+ +++R + + + E + E
Sbjct: 226 AENDSSAKGKQAAGSKRKGPNVTALQKMLEEKRAREEEEQRIRE-EEARIAEEEKRLAE- 283
Query: 431 LQQAADRRLLIEAEQXEKLRNHNIK 505
+++A ++ ++ E+ + +K
Sbjct: 284 VEEARKEEARLKKKEKERKKKEEMK 308
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 224 VEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLRE-HEEQVRKVRAGNQEK 397
V + L +Q E+ K I K + ++ E++ K+ + +RE EE V+A N K
Sbjct: 95 VAQEELRKREQYDELAKPIMSKGLRSRTEQQESIGKLQDAIRELEEENANYVKAWNLRK 153
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 392 EKFQQLESAIXEKLQQAADRRLLIEAEQXEKLRNHNIKLAEVRSAATAK-VXEXTKDIEN 568
++ QLE A+ EKL + + ++E ++ + N EV++ T V + + D+++
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQ-MVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQD 1147
Query: 569 KLTPAXLNP 595
+L P
Sbjct: 1148 QLATTPTAP 1156
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 224 VEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKF- 400
+EK + EQQ K +D + A D + + E+ + EE+ V A +
Sbjct: 326 MEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLLN 385
Query: 401 QQLE-SAIXEKLQQAADRRLLIE 466
QQ +AI +KL + D+ + E
Sbjct: 386 QQFNWTAIVKKLGENWDQLVRFE 408
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 392 EKFQQLESAIXEKLQQAADRRLLIEAEQXEKLRNHNIKLAEVRSAATAK-VXEXTKDIEN 568
++ QLE A+ EKL + + ++E ++ + N EV++ T V + + D+++
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQ-MVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQD 1147
Query: 569 KLTPAXLNP 595
+L P
Sbjct: 1148 QLATTPTAP 1156
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 224 VEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEKF- 400
+EK + EQQ K +D + A D + + E+ + EE+ V A +
Sbjct: 326 MEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLLN 385
Query: 401 QQLE-SAIXEKLQQAADRRLLIE 466
QQ +AI +KL + D+ + E
Sbjct: 386 QQFNWTAIVKKLGENWDQLVRFE 408
>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
formyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 37 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAE 159
G + + VI A G P+ + T S+E ++EK+ AAE
Sbjct: 151 GAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHAAE 191
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 22 QXMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSLEASK 189
Q MS GG A +A P +P P +P P+ E +++ R +S K
Sbjct: 878 QIMS-GGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRPKSTTPQK 932
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 356 EEQVRKVRAGNQEKFQQLESAIXEK 430
EE+ R ++A NQ +QLE AI E+
Sbjct: 374 EEERRALKADNQTLQKQLEKAIQER 398
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 91 RRADSPEKTPSVEEIQEKLK 150
RRAD PE+TPS ++ L+
Sbjct: 21 RRADRPEETPSSSVYEQNLR 40
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 55 VILAEPVGVPVPRRADSPEKTPSVEEIQEKL 147
V L +P+ P P A+S + T S E++ +L
Sbjct: 182 VSLPQPIAAPAPPSAESSKSTISDEDVAWQL 212
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +2
Query: 302 ADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIXEKLQQAADRRLLIEA-EQX 478
+D ++ + +++L H E +RKV +KF + + +++A + EA +
Sbjct: 108 SDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEKETLLNSVKRA--KVSYHEACDDL 165
Query: 479 EKLRNHNIKLAEVRSAATAKVXEXTK-DIENK 571
E R N K E ++ K+ E D +NK
Sbjct: 166 ESARQKNDKYREQKTQRNLKLSESDMLDKKNK 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,964
Number of Sequences: 5004
Number of extensions: 25293
Number of successful extensions: 166
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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