Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0742
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    33   0.007
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    26   0.81 
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    25   2.5  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          24   4.3  
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    23   5.7  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   5.7  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   7.5  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   10.0 

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 33.1 bits (72), Expect = 0.007
 Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
 Frame = +2

Query: 251  QQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAG---NQEKFQQLESAI 421
            QQ  E  +   +++ +A  K DE L++M  +L + ++ ++K++     N+++ QQL   +
Sbjct: 715  QQRREQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKLQQELLTNEQQLQQLAGVV 774

Query: 422  XE------KLQQAADRRLLIEAEQXEKLRNHNIKLAEVR 520
             E       L++  +    I A+  + +     KL +VR
Sbjct: 775  FEGETEETTLREELEHSRTILAKLQKGIEEEQAKLDQVR 813


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 26.2 bits (55), Expect = 0.81
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 332 MIERLREHEEQVRKVRAGNQEKFQQLESA--IXEKLQQAADRRLLIEAEQXEKLR 490
           M E +R+    + +  A N+   ++L     +  K Q+  +RR LI  E+ EK+R
Sbjct: 1   MREAIRQLTNSLAEANARNERINEELTQMRILMTKQQEYTERRELIAREEMEKMR 55


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 203 LKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRA 382
           LK   E   K    +  +T E     E+ +  A     EN+K + ER R  E + +K+R 
Sbjct: 148 LKQRFEAERKRTRVI--RTEEYIPTQEELLEEAEITERENIKSL-ERFRRMELEKQKIRP 204

Query: 383 GNQE 394
            N++
Sbjct: 205 TNKK 208


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 245 LEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLRE 352
           L+ +  +  K +E +  T  +  D+N KK IER  E
Sbjct: 36  LKGEVEKQSKKLEKRKETLGESLDKNHKKKIERDEE 71


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 308 KRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIXEKLQQAADRRLLIEAEQXEKL 487
           KR+E  +     +     ++  +    QEK +QL++ I  K +Q   ++L++  +  E L
Sbjct: 246 KREEQEQFSNYEINSKIRKLINIPVSAQEKLRQLQTGIFAKDKQQQQQQLVL-PKCDELL 304

Query: 488 RNHN 499
            N N
Sbjct: 305 SNSN 308


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 115 TPSVEEIQEKLKAAEERR 168
           TP++EE++ + + AE+R+
Sbjct: 298 TPAIEELENECRIAEQRQ 315


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 458 LIEAEQXEKLRNHNIKLAEVRSAATAKVXEXTKDIENKLTPAXLNP 595
           L+E  + E L   +  L+ +RSA  + +      + +KLTP    P
Sbjct: 106 LLELVKAEILTTIDSSLSSLRSAIKSDLLAEILALADKLTPVLAKP 151


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 248 EQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREH-EEQVRKVR 379
           E     +Y+A  D      +K+D  L ++   +RE  E ++ K+R
Sbjct: 167 EAAGTSMYEAKRDSALKLIEKKDAKLNELYAVIREEIEPKLEKLR 211


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,209
Number of Sequences: 2352
Number of extensions: 6555
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)