Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0742
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 227 EKTRLTLEQQTAEVYKAIEDK 289
           E  +LTL Q+TA+ +K ++DK
Sbjct: 385 ETNQLTL-QETADAFKDLQDK 404


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +2

Query: 263 EVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAGNQEK 397
           E+ K+ +D     ADK ++ +   + R+      V   + GN+++
Sbjct: 60  EIEKSEDDSFNNQADKSEKRIPLYVCRVLHTTVWVAGAQRGNEQR 104


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 102 LTRKDSFRRRDPREAEGS*RE 164
           L   +SFR+R  REA G+ R+
Sbjct: 433 LAGDESFRKRRQREAAGNCRK 453


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 341  RLREHEEQVRKVRAGNQEKFQQLESAIXEKLQQAADRRLLIEAEQXE 481
            R+R  +EQ R      Q++ QQ +    ++ QQ   ++   +A + E
Sbjct: 1194 RIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,478
Number of Sequences: 438
Number of extensions: 1959
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)