Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0741
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   1.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.8  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 16  CVNKCGMKKKEF 51
           C  KCG+KK EF
Sbjct: 241 CCEKCGLKKIEF 252


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 256  RPSALLPGIGSWIPRLIRVLNLAMRNTRG*SDPGRV 363
            + SAL P  G    R++R +      TR  +  GRV
Sbjct: 902  KSSALRPASGGTTARVVRCVCAGSTGTRRATGCGRV 937


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 13/57 (22%), Positives = 22/57 (38%)
 Frame = -1

Query: 197 APRVKSPATGQRCCQ*RSATVTRHLPGLAAGYRPDGATS*FLHYGICPGNSFFFIPH 27
           AP   + ++G       +A+   H+P   A Y  +G       +   P N F   P+
Sbjct: 33  APPPATTSSGSPASVASNASAPLHIPAKRAAYDCEGVIRHHGQWNYSPDNHFEQYPN 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,202
Number of Sequences: 336
Number of extensions: 2536
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)