Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0741
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    29   0.58 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.8  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.8  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   3.1  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   5.4  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   7.2  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   9.5  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 121 PDSLLDTDPMGLRADSSTTESAQETP 44
           P SL  TDP  +   SST +SAQ+TP
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTP 426


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 554 CFSSVAPHSAEFLMWFVGF 498
           CFSS +P    F  W VGF
Sbjct: 96  CFSSSSPSKFSFTQWLVGF 114


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 154 SKGVPQSLGTSPDSLLDTDPMGLRADSSTTESAQETPSSS 35
           +KGV ++L T+  +    D     +DSS++ SA  + SSS
Sbjct: 281 TKGVMEALSTNDTTNTTDDATNTTSDSSSSSSASASSSSS 320


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 166 NVAASKGVPQSLGTSPDSLLDTDPMGLRADSSTTESAQETPSSS 35
           NV  S  +P S  TSP+ L      GL ++SST    + T  SS
Sbjct: 271 NVVGS--LPSSSNTSPNHLASVPNRGLTSNSSTGSFTKYTNGSS 312


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 483 STLMDETYKPHKKFRAMRRDTGEAXARXVQ 572
           S L+DE  K HK  RA++   GE+    V+
Sbjct: 120 SALLDEPEKVHKLVRAVKSTLGESFCTEVK 149


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 162 LLPVKECHSHSAPPRTRC 109
           ++P+ +C SH   PR RC
Sbjct: 191 VIPIVQCLSHRTVPRLRC 208


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 157 ASKGVPQSLGTSPDSLLDTDPMGLRADSSTTESAQETP 44
           AS  +P++    PD+LL       + D+ + +  QE+P
Sbjct: 3   ASTSIPETPSKLPDALLVNSDPASKVDNVSVKIEQESP 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,392
Number of Sequences: 5004
Number of extensions: 41418
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)