Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0741
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0044 - 19198001-19199236                                         35   0.049
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975...    30   1.4  
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154     30   1.8  
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847...    29   4.2  
01_01_0837 + 6533838-6534356                                           28   5.6  
12_01_0453 - 3572745-3572918,3573370-3573430,3573646-3573783,357...    28   7.4  
06_01_1039 - 8158929-8159023,8159663-8159966                           28   7.4  
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    28   7.4  
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852     28   7.4  

>02_04_0044 - 19198001-19199236
          Length = 411

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
 Frame = -3

Query: 327 HCQIQYPNQSGNPTSDTGEEGGRASR*VRCEL-----DVRRRELLHRQSPESQVAGDRPT 163
           H  I Y + SG  ++  G +GG AS      L     D R    +   SP+  V   R  
Sbjct: 246 HSTIIYESGSGGSSNSAGADGGAASPTPLVRLGWNKQDPRYMATIIMDSPKVVVLDIRYP 305

Query: 162 LLPVKECHSHSAPPRTRCW 106
            LPV E H H +P     W
Sbjct: 306 TLPVVELHRHHSPVNAIAW 324


>02_02_0491 -
           10896463-10897172,10897246-10897353,10897457-10897558,
           10897674-10897772,10898995-10899093,10900622-10900943
          Length = 479

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 382 P*KSTPRTDGPPRPPMTCPCS 444
           P K +PR DGPP+ P T P S
Sbjct: 152 PVKWSPRADGPPKQPATFPAS 172


>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
          Length = 520

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +1

Query: 199 LSMKKLSASHI*LTTDSP*RPSALLPGIGSWIPRLIRVLNLAMRNTRG*SDPGRVVLVRG 378
           L  + L    +   T S  +P A++P  G+ + +     + A R     + P  V   + 
Sbjct: 271 LQAQHLQGREVVAHTTSAQQPQAMMPAQGAEVEQNGETKSSAQRAPAACNCPAHVQRPQA 330

Query: 379 RP*KSTPRTDGPPRPPMTCPCSN 447
           RP  + P T   PRP    P ++
Sbjct: 331 RPFNNVPPTPLRPRPATAAPTNS 353


>06_03_1011 -
           26882011-26882157,26882576-26884248,26884607-26884783,
           26885313-26885416,26885896-26886032
          Length = 745

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 454 STRLSTGMSSAGAVGRLSSVCSSKDDRGLEQPDPGPI 344
           ST LS G             C+S DD+ + +PDP P+
Sbjct: 577 STSLSCGTEYDHETHHADEPCASHDDKVVSEPDPLPV 613


>01_01_0837 + 6533838-6534356
          Length = 172

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 288 TSDTGEEGGRASR*VRCELDVRRRELLHRQSPESQVAGDRPTLLPVKECHSHSAPPRT 115
           ++  G  GGR     +   +++R E+    +  S     RP L  + E   H +P R+
Sbjct: 108 SAGAGAGGGRRKTTAQIIAEIKRMEIRRAMATSSAAVAWRPALASIPEEQHHHSPRRS 165


>12_01_0453 -
           3572745-3572918,3573370-3573430,3573646-3573783,
           3573882-3574003,3574078-3574233,3575337-3575477,
           3575643-3576044
          Length = 397

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 52  PGQIP*WRNQLVAPSGLYPAASPGRCRVTVA 144
           P  +P W   L A +GLYPA       V VA
Sbjct: 58  PDAVPRWHAALAAAAGLYPAYVTAGAAVAVA 88


>06_01_1039 - 8158929-8159023,8159663-8159966
          Length = 132

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 454 STRLSTGMSSAGAVGRLSSVCSS 386
           STR +TG   AGA+GR    CSS
Sbjct: 63  STRPATGSVGAGALGRWQVACSS 85


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 306 NQSGNPTSDTGEEGGRAS 253
           + SG+PT D+GEEG  AS
Sbjct: 492 DDSGSPTDDSGEEGSDAS 509


>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
          Length = 764

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 227 CDAESFFIDRAPRVKSPATGQRCCQ 153
           C   S   D  PR+    TG+RCCQ
Sbjct: 166 CRRPSLGNDTVPRLPGRCTGERCCQ 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,996
Number of Sequences: 37544
Number of extensions: 344402
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)