Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0741
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)                 33   0.15 
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)                  32   0.47 
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 31   0.62 
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)                 29   3.3  
SB_26939| Best HMM Match : Drf_FH1 (HMM E-Value=9.2)                   29   4.3  
SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2)             28   7.6  

>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
          Length = 491

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 324 CQIQYPNQSGNPTSDTGEEGGRASR*VRCELDVRRRELLHRQSPESQVAGDRPTLLPVKE 145
           C   +     +P S T  +G + SR V C  +       +   P++   G +PT+   +E
Sbjct: 416 CVSSWYTTEWSPCSATCGKGTQ-SRSVICRRETFTGSKQYETLPDASCTGSKPTVTLNQE 474

Query: 144 CHSHSAPPRTRCWIQTRW 91
           C+    PP    W+ T W
Sbjct: 475 CNKVDCPPE---WVPTEW 489


>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
          Length = 869

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -3

Query: 264 GRASR*VRCELDVRRRELLHRQSPESQVAGDRPTLLPVKECHSHSAPPRTRCWIQTRW 91
           G  SR V C  +       +   P+S   G +PT+   ++C+  + PP    W+ + W
Sbjct: 122 GTQSRSVICRRETFTGSKQYETLPDSSCTGSKPTVTLTQKCNKVNCPPE---WVPSDW 176


>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -3

Query: 264 GRASR*VRCELDVRRRELLHRQSPESQVAGDRPTLLPVKECHSHSAPPRTRCWIQTRW 91
           G  SR V C  +       ++  P+S   G +PT+   +EC+  + P     W+ + W
Sbjct: 732 GTQSRSVICRRETFTGSKQYKTLPDSSCIGSKPTVTSSQECNKVNCPAE---WVSSAW 786


>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
          Length = 1068

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = -3

Query: 324 CQIQYPNQSGNPTSDTGEEGGRASR*VRCELDVRRRELLHRQSPESQVAGDRPTLLPVKE 145
           C   +     +P S T  +G + SR V C  +     + ++   +S  A ++PT+   +E
Sbjct: 744 CTASWYTTEWSPCSATCGKGTQ-SRSVICRRETFTGSMQYKTLSDSNCAENKPTVTLSQE 802

Query: 144 CHSHSAPPRTRCWIQTRW 91
           C+  + P     W+ + W
Sbjct: 803 CNKVNCPAE---WVPSAW 817


>SB_26939| Best HMM Match : Drf_FH1 (HMM E-Value=9.2)
          Length = 188

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 382 P*KSTPRTDGPPRPPMTCPC 441
           P  S P +  PP PP+ CPC
Sbjct: 32  PPPSPPPSPPPPSPPLDCPC 51



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 382 P*KSTPRTDGPPRPPMTCPC 441
           P  S P +  PP PP+ CPC
Sbjct: 155 PPPSPPPSPPPPSPPLDCPC 174


>SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 136 SLGTSPDSLLDT--DPMGLRADSSTTESAQETPSSSFHIC 23
           S  TS DS+ D   +PM   A+ STT+  +  P  S   C
Sbjct: 157 SYETSVDSMTDIWEEPMAKEAEKSTTKQCKHAPFHSVSCC 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,865,278
Number of Sequences: 59808
Number of extensions: 357512
Number of successful extensions: 1676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)