Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0741
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    93   3e-21
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   4.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 92.7 bits (220), Expect = 3e-21
 Identities = 50/93 (53%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
 Frame = +3

Query: 279 YRKLDSPTDSGIESGNEKHEXXXXXXXXXXXXXXXLEEHTEDRRPTAPADDMPVLKRVLQ 458
           +RKLDSP+DSGIESG EK +                   +ED+      +DMPVLKRVLQ
Sbjct: 571 FRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKE----VEDMPVLKRVLQ 626

Query: 459 APPLYGGTSTLMDETYKPHKKFRAMR-RDTGEA 554
           APPLY  T++LMDE YKPHKKFRA+R +D+ EA
Sbjct: 627 APPLY-DTNSLMDEAYKPHKKFRALRQKDSAEA 658


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 513 HKKFRAMRRDTG 548
           +KK+RA+R DTG
Sbjct: 52  NKKYRALRLDTG 63


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 130 RVTVALLYWQQRW 168
           RVT  +L WQ +W
Sbjct: 61  RVTCDVLSWQSKW 73


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 106 DTDPMGLRADSSTTESAQETPSS 38
           D  P+  ++DSS++  + E+P S
Sbjct: 439 DQPPLSPQSDSSSSSRSAESPMS 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,339
Number of Sequences: 438
Number of extensions: 2963
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)