Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0741
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    30   1.5  
At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase...    29   2.7  
At1g01225.1 68414.m00037 NC domain-containing protein-related co...    27   8.2  

>At2g33240.1 68415.m04072 myosin, putative similar to myosin
           (GI:433663) [Arabidopsis thaliana]; myosin my5A
           (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 70  WRNQLVAPSGLYPAASPGRCRVTVALLYW 156
           W++QL+  SG++   SP   +VTV    W
Sbjct: 3   WKHQLIGFSGIFSNVSPASVKVTVGSQVW 31


>At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK5) identical to GB:BAA28831 from
           [Arabidopsis thaliana]; mitogen-activated protein kinase
           kinase (MAPKK) family, PMID:12119167
          Length = 348

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 560 SLCFSSVAPHSAEFLMWFVGFIHQC-RSSAVQRWSLKHTFEHGHVIGGRGGPSVLGVL 390
           ++C S      A     F  F+  C +S   +RWS +   +H  ++   GGP++  +L
Sbjct: 281 AICMSQPPEAPATASQEFRHFVSCCLQSDPPKRWSAQQLLQHPFILKATGGPNLRQML 338


>At1g01225.1 68414.m00037 NC domain-containing protein-related
           contains weak hit to Pfam profile PF04970: NC domain
          Length = 260

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 430 SSAGAVGRLSS--VCSSKDDRGLEQPDPGPIILSC 332
           SS  ++   SS  +CS   D G  QPD G ++LSC
Sbjct: 52  SSTSSISSSSSEDICSIFPDCGFRQPDSG-VVLSC 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,144
Number of Sequences: 28952
Number of extensions: 242068
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)