Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0739
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    33   0.017
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   2.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   3.4  
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    24   6.0  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 256  SDEEIWRALEHAHLRAFVXGLPAGLRHEV 342
            +DEEIW ALE A L+ F+  L  GL   V
Sbjct: 1326 TDEEIWHALEAASLKQFIQTLDGGLYSRV 1354


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
            Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 143  PSISEWTTYILIVKVNYIDLLNYRIHVFRNF 51
            PS++     + IV  NY+ L+ Y   +FR+F
Sbjct: 1026 PSLAVSDRCVAIVLGNYVALVGYGSEIFRDF 1056


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 256  SDEEIWRALEHAHLRAFVXGLPAG 327
            S+EE+  A + A++  F+ GLP G
Sbjct: 1224 SEEEMIEACKKANIHEFILGLPNG 1247


>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 23  GTYSSENDPGSCGTRGCGN*VSLYNSLLQLIYKLS 127
           G  +S+      G    G  V+ YN L Q IYKLS
Sbjct: 146 GNEASKKVALKLGFEDSGTFVTAYNGLQQHIYKLS 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,065
Number of Sequences: 5004
Number of extensions: 25262
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)