Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0739
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 34 0.027
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 33 0.048
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080... 33 0.063
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 32 0.11
02_02_0490 - 10879761-10879861,10879946-10880185,10880274-108803... 32 0.11
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 32 0.15
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 31 0.34
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 29 1.0
08_02_1155 - 24756414-24756836 28 2.4
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 27 5.5
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 27 5.5
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 26 7.2
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 26 7.2
12_02_0396 + 18577574-18578056,18578094-18578723 26 9.6
10_01_0236 + 2486371-2486952 26 9.6
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 26 9.6
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876... 26 9.6
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 26 9.6
>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 34.3 bits (75), Expect = 0.027
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+PF ++D ++W ALE AHL+ + GL EV+
Sbjct: 1363 DPFNEHNDADLWEALERAHLKDVIRRNALGLDAEVS 1398
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 33.5 bits (73), Expect = 0.048
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGL 330
+P + YSD+EIW+ALE L+ V P L
Sbjct: 1381 DPLQLYSDDEIWQALERCQLKDAVTSKPEKL 1411
>02_02_0492 - 10907529-10907629,10907714-10907953,10908035-10908098,
10908416-10908721,10909347-10909561,10909656-10909950,
10910493-10910597,10911112-10911180,10911433-10911519,
10911953-10913704,10914964-10915054,10915217-10915488
Length = 1198
Score = 33.1 bits (72), Expect = 0.063
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHL 297
+P E YSDE+IW AL+ HL
Sbjct: 1052 DPLEEYSDEQIWEALDSCHL 1071
>04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+P YSD EIWRALE L+ V P L VA
Sbjct: 1422 DPIGQYSDAEIWRALEGCQLKDVVASKPQKLDALVA 1457
>02_02_0490 - 10879761-10879861,10879946-10880185,10880274-10880337,
10880426-10880731,10881098-10881312,10881417-10881711,
10882193-10882357,10882477-10882527,10882657-10883109,
10883195-10883281,10883736-10884800,10884858-10885376
Length = 1186
Score = 32.3 bits (70), Expect = 0.11
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHL 297
+P E YSDE+IW AL HL
Sbjct: 1040 DPLEEYSDEQIWEALNSCHL 1059
>06_03_0473 + 21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 31.9 bits (69), Expect = 0.15
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPA 324
+P +SDEEIW ALE L+ + PA
Sbjct: 1065 DPLGLHSDEEIWEALEKCQLQTAIRSTPA 1093
>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+P YS++EIW+ALE L+ V P L VA
Sbjct: 1333 DPIGRYSEDEIWQALERCQLKDIVATKPEKLDALVA 1368
>05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+P ++DE+IW AL L+ + LP L V+
Sbjct: 1329 DPLGLHTDEDIWEALNKCQLKKTISALPGLLESPVS 1364
>08_02_1155 - 24756414-24756836
Length = 140
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 222 IRSGIEPVRGVQRRGDLARAGTRPP 296
+R + + V RRG+ AR G+RPP
Sbjct: 33 LRHDVTEAQAVLRRGNAARRGSRPP 57
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 339 LVPQPGRQPXHEGTEVGVFQRAPDLLV 259
L P P + HEGTE+ V+++ + +
Sbjct: 171 LTPPPKKDTTHEGTEMAVYRKGKSVFL 197
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 244 FEAYSDEEI-WRALEHAHLRAFVXGLPAGLRHE 339
F+ ++E+ WR+ EH +RA + + A L HE
Sbjct: 253 FKKLAEEKAAWRSREHEKVRAILEDMKADLDHE 285
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 326 PAGSPCTKARRWACSSARQISS 261
P SPCT ARR A ++ R+++S
Sbjct: 102 PPASPCTTARRRARAAWRKVAS 123
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHL 297
+P E +D+EIW ALE L
Sbjct: 1358 DPLEECTDQEIWEALEKCQL 1377
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 102 SELYRLT*LPHPRVPQLPGSFSLEYVPS 19
+EL++ T HP VP+ PG+F++E + S
Sbjct: 23 AELFQWT---HPDVPRSPGTFTIEKMVS 47
>10_01_0236 + 2486371-2486952
Length = 193
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 225 RSGIEPVRGVQRRGDLARAGTRPPP 299
RSG R QRR L RA PPP
Sbjct: 115 RSGEGQARAPQRRRPLERAAPLPPP 139
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 90 RLT*LPHPRVPQLPGS 43
RLT +P P+VPQ PG+
Sbjct: 505 RLTSVPSPKVPQSPGT 520
>04_04_0419 +
25086456-25086768,25087302-25087369,25087458-25087681,
25087929-25088012,25088593-25088806,25089252-25089428,
25089526-25089645,25089865-25089991,25090104-25090130,
25090526-25091007
Length = 611
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 341 TSCRSPAGSPCTKARRW 291
T+CR PAG C KA W
Sbjct: 556 TACRLPAGLFCYKANGW 572
>01_05_0215 + 19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 256 SDEEIWRALEHAHLRAFVXGLPAG 327
S+EEI A E A+ F+ GLP G
Sbjct: 1041 SEEEIIAAAEAANAHQFISGLPDG 1064
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,044,688
Number of Sequences: 37544
Number of extensions: 152237
Number of successful extensions: 428
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -