Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0739
         (350 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    24   1.4  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    22   7.6  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    22   7.6  

>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 223 YVQESNPFEAYSDEEIWRALEHAH 294
           +VQ +  F+A   EE W   E  H
Sbjct: 15  FVQATQAFKALDPEEAWYVYERCH 38


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 54  LPGSFSLEYVPSI 16
           LPG F + YVP +
Sbjct: 424 LPGCFEISYVPDL 436


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 54  LPGSFSLEYVPSI 16
           LPG F + YVP +
Sbjct: 424 LPGCFEISYVPDL 436


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,440
Number of Sequences: 2352
Number of extensions: 5792
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25364985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)