Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0739
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   4.2  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   7.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.4  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 336 VPQPGRQP 313
           VPQPGR+P
Sbjct: 26  VPQPGRRP 33


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 336 VPQPGRQP 313
           VPQPGR+P
Sbjct: 12  VPQPGRRP 19


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 95  YIDLLNYRIHVFRNFPDHSH 36
           Y  LL Y   +FR   DH +
Sbjct: 382 YSSLLRYPRSIFRQTDDHQN 401


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 66  RVPQLPGSFSLEYVPSI 16
           R+PQL     L+Y+P+I
Sbjct: 329 RMPQLIRKIFLKYLPTI 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,067
Number of Sequences: 438
Number of extensions: 1641
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)