Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0739
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 36 0.006
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta... 36 0.010
At3g21250.1 68416.m02685 ABC transporter family protein similar ... 36 0.010
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter... 36 0.010
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter... 35 0.013
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4... 34 0.031
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 32 0.093
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR... 28 1.5
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 28 1.5
At3g13100.1 68416.m01640 ABC transporter family protein similar ... 27 2.7
At3g13080.1 68416.m01635 ABC transporter family protein almost i... 27 2.7
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi... 27 3.5
At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing ... 26 6.1
At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic... 26 8.1
At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identic... 26 8.1
At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identic... 26 8.1
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1488
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+PF ++D ++W ALE AH++ + P GL EV+
Sbjct: 1324 DPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVS 1359
>At3g62700.1 68416.m07043 glutathione-conjugate transporter, putative
similar to glutathione-conjugate transporter AtMRP4
GI:2959767 from [Arabidopsis thaliana]
Length = 1539
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+P E YSDEEIW++LE L+ V P L VA
Sbjct: 1393 DPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVA 1428
>At3g21250.1 68416.m02685 ABC transporter family protein similar to
MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
thaliana]
Length = 1294
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+P YSD+EIW+ALE L+ + LP L V+
Sbjct: 1141 DPLGVYSDDEIWKALEKCQLKTTISNLPNKLDSSVS 1176
>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
(MRP1) identical to glutathione S-conjugate transporting
ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
Length = 1622
Score = 35.5 bits (78), Expect = 0.010
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEV 342
+PF ++D ++W +LE AHL+ + P GL EV
Sbjct: 1333 DPFSEHNDADLWESLERAHLKDTIRRNPLGLDAEV 1367
>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
(MRP2) almost identical to MgATP-energized glutathione
S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
Length = 1623
Score = 35.1 bits (77), Expect = 0.013
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEVA 345
+PF ++D ++W +LE AHL+ + P GL EV+
Sbjct: 1338 DPFGEHNDADLWESLERAHLKDTIRRNPLGLDAEVS 1373
>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
identical to AtMRP4 GI:2959767 from [Arabidopsis
thaliana]
Length = 1516
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGL 330
+P E YSDEEIW++LE L+ V P L
Sbjct: 1370 DPTEQYSDEEIWKSLERCQLKDVVATKPEKL 1400
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter, PF00664:
ABC transporter transmembrane region
Length = 1495
Score = 32.3 bits (70), Expect = 0.093
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXGLPAGLRHEV 342
+PF ++D +W AL AH++ + P GL EV
Sbjct: 1331 DPFSEHNDAGLWEALHRAHIKDVISRNPFGLDAEV 1365
>At3g13090.1 68416.m01639 ABC transporter, putative similar to
MRP-like ABC transporter [Arabidopsis thaliana]
GI:2316016; contains Pfam profile: PF00005 ABC
transporter
Length = 1466
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHL 297
+P E Y+D++IW AL++ L
Sbjct: 1315 DPLEEYTDDQIWEALDNCQL 1334
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHLRAFVXG 315
+P E +SD++IW AL+ + L V G
Sbjct: 1364 DPLEEHSDDKIWEALDKSQLGDVVRG 1389
>At3g13100.1 68416.m01640 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1493
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHL 297
+P E Y+D++IW AL+ L
Sbjct: 1337 DPLEEYADDQIWEALDKCQL 1356
>At3g13080.1 68416.m01635 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1514
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 238 NPFEAYSDEEIWRALEHAHL 297
+P E Y+D++IW AL+ L
Sbjct: 1365 DPLEEYTDDQIWEALDKCQL 1384
>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (8 copies at C-terminus)
Length = 961
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 321 RQPXHEGTEVGVFQRAPDLLVAVRLERVRFLNVSTVSGLIPEYNP 187
RQ HE + VF +P VA R+ R + S + P+Y P
Sbjct: 288 RQASHEDNNLSVFGASPPSSVASRMRRNQEDQQSQGRRMPPQYTP 332
>At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing
protein DNA binding protein - Hordeum
vulgare,PID:e1334094
Length = 247
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 326 PAGSPCTKARRWACSSARQISSSLYASNG 240
P G C K+RR SS +SL A++G
Sbjct: 69 PVGGGCRKSRRPKSSSGNNTKTSLTANSG 97
>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 486
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 51 EVAEHVDAVIK*VYIIHFYN*YISCPF 131
EVAEHV K + H+ N Y++ PF
Sbjct: 127 EVAEHVGTKSKEQCLEHYRNIYLNSPF 153
>At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 483
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 51 EVAEHVDAVIK*VYIIHFYN*YISCPF 131
EVAEHV K + H+ N Y++ PF
Sbjct: 127 EVAEHVGTKSKEQCLEHYRNIYLNSPF 153
>At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 487
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 51 EVAEHVDAVIK*VYIIHFYN*YISCPF 131
EVAEHV K + H+ N Y++ PF
Sbjct: 127 EVAEHVGTKSKEQCLEHYRNIYLNSPF 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,284,515
Number of Sequences: 28952
Number of extensions: 125285
Number of successful extensions: 294
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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