Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0736
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    29   0.94 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    28   1.6  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   3.8  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   6.6  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 455 GSSETTCENARIIVIFDQDVCSPKILITDSGTGEILADXLISTDTE---FEISSDTT 616
           G  E   E   I  + +QD C+  IL   +GTG+     LI+  T+    EIS+ +T
Sbjct: 100 GQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTTLARLIAVTTKSRFIEISATST 156


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 399  KRKNLVNIIRVMEKQLSS 452
            KRK++ NIIRV EKQL S
Sbjct: 1010 KRKSVENIIRVTEKQLRS 1027


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 338 NYLRHYRXHILHQXHIPL 285
           NY ++Y   ++H+ HIPL
Sbjct: 486 NYYKNYSARLIHEYHIPL 503


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +2

Query: 437 EAVIKQGSSETTCENARIIVIF----DQDVCSPKILITDSGTGEILADXLISTDTEFEIS 604
           EA+++Q +  T C   RI +IF    D    S K+L         L+   +     F+  
Sbjct: 309 EALVEQVA--TACGLRRIGIIFTDLTDDGSNSGKVLCKRHSDSYFLSSLEVYNSANFQTK 366

Query: 605 SDTTCKWSXTXXTSNDPVXKXVTVN 679
               CKWS +    +  V   ++ N
Sbjct: 367 FKNPCKWSRSGYFGSKFVTSVISGN 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,818
Number of Sequences: 5004
Number of extensions: 30460
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)