Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0736
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961...    28   6.9  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     28   9.1  

>06_01_1186 -
           10195175-10195621,10195882-10195930,10196019-10196168,
           10196513-10196658,10196877-10196914,10197000-10197216,
           10197393-10197611,10197753-10197879,10198631-10198812,
           10198928-10199131,10199773-10199782,10200789-10200815,
           10201072-10201132,10201731-10201851
          Length = 665

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 494 VIFDQDVCSPKIL--ITDSGTGEILADXLISTDTEFEI 601
           VIFD   C+PK+L  +    TGE+LAD + +     EI
Sbjct: 293 VIFDLYQCAPKVLKVVVPYITGELLADEVETRSKAVEI 330


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 533  ITDSGTGEILADXLISTDTEFEISSDTTCKWSXTXXTSNDPVXKXVTVNFPDSEVAA 703
            + ++  GE  A+      TE  +   T         T+NDPV +  TV  PD + AA
Sbjct: 1101 VDETTKGETTAEVYAEESTEKTVEDTTVEAPDEKTKTANDPV-EDATVEEPDKKTAA 1156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,224
Number of Sequences: 37544
Number of extensions: 201995
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)