Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0736
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            33   0.19 
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                33   0.33 
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.00 
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     30   2.3  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         29   5.3  
SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)            29   5.3  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   9.3  
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)                     28   9.3  
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)                    28   9.3  

>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 398 HXHCIHGRIHCAHSRDHTHHNYLRHYRXHILH 303
           H H  H   H  H+  H HH++  HY  H  H
Sbjct: 219 HHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHH 250



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 392 HCIHGRIHCAHSRDHTHHNYLRHYRXHILHQXH 294
           H  H   H  H+  H HHN+  H+  H  H  H
Sbjct: 214 HQHHHHHHHQHNHHHHHHNHHHHHHHHYHHYHH 246



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 398 HXHCIHGRIHCAHSRDHTHHNYLRHYRXHILHQXH 294
           H H  H   H  H  +H HH++  ++  H  H  H
Sbjct: 217 HHHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHHH 251


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 404 PLHXHCIHGRIHCAHSRDHTHHNYLRHYRXHILHQXHI 291
           P H +  H      H + H HHN+  H++ H  H  HI
Sbjct: 41  PRHRYHHHHHHQHNHHQHHHHHNHHHHHQQHHHHHHHI 78


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 398 HXHCIHGRIHCAHSRDHTHHNYLRHYRXHILHQXH 294
           H H  H      H   H HHN+  H++ H  H  H
Sbjct: 262 HHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHH 296



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 404 PLHXHCIHGRIHCAHSR-DHTHHNYLRHYRXHILHQXH 294
           P H +  H   H  H+   H HH++  H+  H  HQ H
Sbjct: 253 PRHRYHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQH 290



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 398 HXHCIHGRIHCAHSRDHTHHNYLRHYRXHILHQXH 294
           H H  H   H  H   H HH++  H+  H  H  H
Sbjct: 260 HHHHHHQHNHHQHHHHHHHHHH-NHHHHHQQHHHH 293


>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 404 PLHXHCIHGRIHCAHSRDHTHHNYLRHYRXHILHQXH 294
           P H H      H  H  DH HH++  H   H  H  H
Sbjct: 3   PNHHHHHDHHHHDHHHHDHQHHDHQHHDHQHHDHHHH 39


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 398 HXHCIHGRIHCAHSRDHTHHNYLRHYRXHIL 306
           H H IH + H  H R H H +Y RH+  H++
Sbjct: 89  HRH-IHRQHHHQHYRHHRHQHY-RHHHHHLI 117



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 383 HGRIHCAHSRDHTHHNYLRHYRXHILH 303
           H  IH  H   H  H+  +HYR H  H
Sbjct: 89  HRHIHRQHHHQHYRHHRHQHYRHHHHH 115


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 398 HXHCIHGRIHCAHSRDHTHHNYLRHYRXHILHQXH 294
           H H  HG  H  H   H HH +      H  H+ H
Sbjct: 329 HSHENHGHSHENHGHSHKHHGHSHDNHGH-SHENH 362


>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
          Length = 330

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 377 RIHCAHSRDHTHHNYLRHYRXHILHQXH 294
           R   +H  DH H N  +H+  H  HQ H
Sbjct: 264 RTSSSHYHDHQHRNPHQHHNNHHDHQHH 291


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 404 PLHXHCIHGRIHCAHSRDHTHHNYLRHY 321
           P H H  H R H  H   H HH+Y  H+
Sbjct: 568 PHHHHLHHHRHHHRHHHYH-HHHYPHHH 594


>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
          Length = 509

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/80 (22%), Positives = 30/80 (37%)
 Frame = +2

Query: 431 DGEAVIKQGSSETTCENARIIVIFDQDVCSPKILITDSGTGEILADXLISTDTEFEISSD 610
           D  +    G  ++ C +     +FD + C     + D G G+  +  L    + F I   
Sbjct: 405 DDSSCDDDGGDDSGCYDDGNGSVFDDEGCDDSGCVNDGGDGDGSSSGLEYGFSGFHIWHH 464

Query: 611 TTCKWSXTXXTSNDPVXKXV 670
            + +W      S D V K V
Sbjct: 465 GSYRWPFDVSASRDAVLKDV 484


>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
          Length = 815

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 401 LHXHCIHGR-IHCAHSRDHTHHNYLRHYRXHI 309
           LH + +H   +H  H  DH HH+   ++  HI
Sbjct: 382 LHDYYLHHHHLHHNHKNDHKHHHLHDNHHYHI 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,992
Number of Sequences: 59808
Number of extensions: 240085
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)