BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0736 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g63100.1 68416.m07087 glycine-rich protein 29 2.5 At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 4.4 At2g43970.2 68415.m05468 La domain-containing protein contains P... 28 5.8 At2g43970.1 68415.m05467 La domain-containing protein contains P... 28 5.8 >At3g63100.1 68416.m07087 glycine-rich protein Length = 199 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = -2 Query: 398 HXHCIHGRIHCAHSRDHTHHNYLRHYRXHILH 303 H H HG H H RDH H H+R H H Sbjct: 98 HGHG-HGHGHRRHGRDHRHGRDRGHHRGHGHH 128 >At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger) Length = 496 Score = 28.7 bits (61), Expect = 4.4 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -2 Query: 362 HSRDHTHHNYLRHYRXHILHQXH 294 HS+ H HH++ H+ H H H Sbjct: 328 HSKHHHHHHHHHHHHHHHHHNHH 350 >At2g43970.2 68415.m05468 La domain-containing protein contains Pfam profile PF05383: La domain Length = 529 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -2 Query: 404 PLHXHCIHGRIHCAHSRDHTHHNYLRH 324 P+ H + + H H R H HH++ RH Sbjct: 100 PIQPHLVPVQNHHPHHRFHQHHHHNRH 126 >At2g43970.1 68415.m05467 La domain-containing protein contains Pfam profile PF05383: La domain Length = 545 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -2 Query: 404 PLHXHCIHGRIHCAHSRDHTHHNYLRH 324 P+ H + + H H R H HH++ RH Sbjct: 100 PIQPHLVPVQNHHPHHRFHQHHHHNRH 126 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,427,709 Number of Sequences: 28952 Number of extensions: 165399 Number of successful extensions: 368 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 342 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 363 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -