Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0735
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.3  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.7  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.7  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 77  YSQYFLNGYHHVID 36
           Y+ YFLN Y H+ +
Sbjct: 346 YTTYFLNTYPHLFN 359


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 551 LESLHIDLRCVLKKYGKNHGLNMKAIISYS 640
           +ESL  +L+  +  +    G++   IISYS
Sbjct: 182 IESLACELKNTVDDFNDIFGISFLLIISYS 211


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 433 FVHQLIVSNYFYCYIVVSLTIILSTHYIGKH 341
           F+  LI+    YC I  +L    +T  + KH
Sbjct: 246 FIIPLIILLILYCIIAKNLMSNAATLVLNKH 276


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 561 YILICDVYLK 590
           ++LICD YLK
Sbjct: 18  FLLICDSYLK 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,385
Number of Sequences: 336
Number of extensions: 3332
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)