Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0735
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    31   0.011
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    26   0.40 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    26   0.40 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    26   0.40 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    26   0.40 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 31.1 bits (67), Expect = 0.011
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
 Frame = +2

Query: 32  FNQSHDDN-HSKNTESIIEKNNGGNDQKLTDVNPTSAGETDDFTDMFSEKDDFKIKDLLK 208
           +N    +N +  NTES+++  N GND +   V            D+F  +   K      
Sbjct: 266 YNSPSSENLYYVNTESLMKSENQGNDVQYERVQ-----------DVFDSQLTVKAVSKNG 314

Query: 209 VDKNDFTNNSTLTDNWDDHEGYYKIRVGDVVNNRFTIKDTLGQGVFANVVRA--QDNGQR 382
           V      NN TL+  W++H+   +  +  V  N  T++  +   +  NV ++   +N QR
Sbjct: 315 VLLFGLANN-TLS-CWNEHQSLDRQNIDVVARNEDTLQMVVSMKIKQNVPQSGRVNNTQR 372

Query: 383 NNYVAIKIIRNNELM 427
           N Y+     RN  ++
Sbjct: 373 NEYLLALSDRNQNVL 387


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 230 NNSTLTDNWDDHEGYYKIRVGDVVNNRFTIKDTLGQGVFANV 355
           N +T TD  DD+    ++RV DV     TI  T+     ++V
Sbjct: 94  NETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDV 135


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 230 NNSTLTDNWDDHEGYYKIRVGDVVNNRFTIKDTLGQGVFANV 355
           N +T TD  DD+    ++RV DV     TI  T+     ++V
Sbjct: 142 NETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDV 183


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 230 NNSTLTDNWDDHEGYYKIRVGDVVNNRFTIKDTLGQGVFANV 355
           N +T TD  DD+    ++RV DV     TI  T+     ++V
Sbjct: 142 NETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDV 183


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 230 NNSTLTDNWDDHEGYYKIRVGDVVNNRFTIKDTLGQGVFANV 355
           N +T TD  DD+    ++RV DV     TI  T+     ++V
Sbjct: 142 NETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDV 183


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 508 IFRALHAQRTSLVSFRILTY 567
           I R LH  RTSL + +I++Y
Sbjct: 160 IRRTLHMNRTSLKTSKIVSY 179


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 535 SFVHEVP*KLHXMIFIFWIRLI 470
           ++ HE+   L  MI ++W  L+
Sbjct: 197 TYTHEITYSLFGMIMMYWFPLV 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,666
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)