Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0733
         (515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   4.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.5  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   6.5  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   6.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   8.6  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 385 LFLLHNFRIYL 417
           +F LH FRIY+
Sbjct: 653 IFALHKFRIYI 663


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 481 YNVERTG*MLXYSINMNXH*ILNICESY 398
           YN+ R       SI  N H +  +C  Y
Sbjct: 51  YNLRRIYYFYCVSITFNVHLLFLLCSGY 78


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 58  DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 95



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 171



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 247



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 286 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 323



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 362 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 399



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 438 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 475



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 514 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 551



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 590 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 627


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 182 EVELMETCTAKLELLCIGWIRLRCRSVTGKTVPVRXPP 69
           +  + +  T  L L   G +++  +++TGKT+ +   P
Sbjct: 30  DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP 67


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 263 MWDYIQETDYMY 298
           +WD  Q+T YMY
Sbjct: 318 VWDDEQKTPYMY 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,144
Number of Sequences: 336
Number of extensions: 1912
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)