Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0732
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    43   5e-05
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    42   6e-05
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    28   1.5  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   2.6  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    26   4.5  

>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
 Frame = +3

Query: 117 IEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAIL--LGAKRIGHAYALAKHPLLL 290
           ++F P+L +    L        T   G   D + + + L  L  +RI H   L +   L+
Sbjct: 185 VDFPPELFQEVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVEDKELM 244

Query: 291 EEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPVVISSDDPGAWEAEPLTDDF 470
           + V + +I L +  +SN  L  V  +   P+  FL  G+P  I+ DDP  +    L + F
Sbjct: 245 KRVAEENIMLTMCPLSNLKLRCVNSIAELPVREFLEAGVPFSINCDDPAYFGGYTLENYF 304

Query: 471 YV 476
            +
Sbjct: 305 AI 306


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
 Frame = +3

Query: 210 ENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLST 389
           ++L  A LL +  I H   L K P L      + I + ++ +SN  L L  D   +P  T
Sbjct: 610 DHLASAFLL-SHGINHGILLRKVPFLQYLWYLDQIPIAMSPLSNNALFLAYD--KNPFLT 666

Query: 390 FLSKGLPVVISSDDP--GAWEAEPLTDDFYVA 479
           +  +GL V +S+DDP   A+  EPL +++ VA
Sbjct: 667 YFKRGLNVSLSTDDPLQFAFTREPLIEEYAVA 698


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 115 KGSPRSSCPTRSNPAKISGMSFLTSLAIW 29
           K  P+S CPTR    K+ G  FLT + ++
Sbjct: 290 KRYPKSECPTRLPLEKLEGDEFLTHVDLY 318


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 270 AKHPLLLEEVIKNDIGLEINIIS 338
           A HP++ + V+KND G  I II+
Sbjct: 650 ASHPVVAKRVVKNDEGEPIEIIA 672


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +3

Query: 6   SRVLST-YLQIAKDVKNDMPDIFAGF-DLVGQEDLGEPLIEFAPQLLEASESLDYFFHAG 179
           S ++ T +  I  D++ +M    A + ++ G+E     ++ F   LL      +Y+F+  
Sbjct: 229 SEIIQTNFNTIKSDIEMEMAGGKARWPEVFGKEVRYRTVLGFLTMLLRELIGNNYYFYYA 288

Query: 180 ETDWLGTLTDENLMDAILLGAKRIGHAY 263
              + GT   +  + A++LGA   G  +
Sbjct: 289 TQVFKGTGMTDIFLPAVILGAINFGTTF 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,305
Number of Sequences: 5004
Number of extensions: 58521
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)