Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0732
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536...    45   7e-05
12_02_0643 - 21461123-21461902                                         28   6.2  
01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170...    28   6.2  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    28   8.2  

>07_03_1778 +
           29451902-29452166,29452665-29452849,29453504-29453693,
           29453990-29454168,29454263-29454314,29454426-29454553,
           29454920-29455099,29455209-29455276,29455364-29455506,
           29455682-29455743,29455874-29455987,29456180-29456320,
           29456680-29456832,29456973-29457026,29457102-29457212,
           29457339-29457512,29457600-29457680,29457788-29457886,
           29457905-29458057
          Length = 843

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +3

Query: 195 GTLTDENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRN 374
           G   D + + A  L +  I H   L K P+L        IGL ++ +SN   SL  D   
Sbjct: 637 GEAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQIGLAMSPLSNN--SLFIDYHR 694

Query: 375 HPLSTFLSKGLPVVISSDDPGA--WEAEPLTDDFYVA 479
           +P  TF  +GL V +S+DDP       EPL +++ +A
Sbjct: 695 NPFPTFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIA 731


>12_02_0643 - 21461123-21461902
          Length = 259

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 404 ITCCYIKRRSRSMGGGTLDGRFLC 475
           IT C + R SRS GGG   G  LC
Sbjct: 119 ITSCGLPRSSRSRGGGRRQGGGLC 142


>01_06_0655 -
           30916396-30916578,30916689-30916748,30916916-30917032,
           30917139-30917246,30917301-30917390,30917731-30917799,
           30918086-30918178,30918292-30918384,30918540-30918621,
           30919467-30919534,30919662-30920684
          Length = 661

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 159 PSSRWLPVTGVRI--LLKALPDP 97
           P SRWLP TGV++  L + + DP
Sbjct: 242 PDSRWLPPTGVQVGSLFRGVGDP 264


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 413 CYIKRRSRSMGGGT--LDGRFLCCFCWSGQPTRRLKTTETVSIKFVYLQFTRR 565
           C + + S S  G T  +  +FL C C  G+  +R  T +T  +KF  +  ++R
Sbjct: 256 CCMHKLSPSARGNTHHIGSQFLRCTCSCGRVLQREDTMKTPKLKFDRVDLSQR 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,500,815
Number of Sequences: 37544
Number of extensions: 376334
Number of successful extensions: 1088
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)