Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0732
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          30   1.6  
SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_39181| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)                 29   3.6  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)                28   6.3  
SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)                     28   8.4  

>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 38/114 (33%), Positives = 53/114 (46%)
 Frame = -1

Query: 610  SQFLLNLLSASIFWRSSSEL*VNEFNANCFSSLKSASRLAAPTKAT*KSSVKGSASHAPG 431
            S FL +  S S F  SSS L V   +++  S   ++S L  P+     SS+  S    P 
Sbjct: 900  SDFLTSSSSLSDFLTSSSSLSVFPTSSSLPSDFVTSSSL--PSDFLTSSSLP-SDFLTPS 956

Query: 430  SSLDITTGNPLDRNVLKG*FLTSRTNESTAFDIILISKPISFLITSSSSRGCLA 269
            S L     +P D       FLTS ++ S   D +  S  +   +TSSSSRG L+
Sbjct: 957  SLLSDFLSSPSD-------FLTSSSSLS---DFLTSSSSLRVFLTSSSSRGLLS 1000


>SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 114 LIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAILLGAKRIGHAYALAKHPLLLE 293
           +IE   QL+   + L +  HA +   L +LTD   +   + G +   H  A A +P +LE
Sbjct: 90  MIEMEGQLIRVQDQLGFLQHAADPSMLDSLTD---LQQTVEGMRCFLHKTAEATNPDMLE 146


>SB_39181| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
          Length = 251

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 180 HRRGRSSPSSRWLPVTGVRILLKALPDPPVRLDRIQQKYRACRS*RP---WLFGDTL 19
           + R RSSP++ ++    V  LL AL   P+R+D++   +  C S      W++ D +
Sbjct: 47  NNRLRSSPANYFIASLAVSDLLVALVSLPLRIDQMLHNHNWCLSLEACALWIWSDMI 103


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 171 HAGETDWLGTLTDENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVL 350
           H   T W+ TL++ +  D + L  +     Y L K+   +EE+I N     I+ + +   
Sbjct: 485 HLWNTSWVSTLSNSSSADFVSLSNEIQREIYILYKNSSYIEELIINGFRQPISHVGSLKS 544

Query: 351 SLVRDVRNHPLST 389
           S    V  + L+T
Sbjct: 545 SHCGYVLYYQLNT 557


>SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
 Frame = +3

Query: 75  GFDLVGQEDLGEPLIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAILLGAKRIG 254
           G DL G E LGE         + A E+LD            TL DE L D +L     + 
Sbjct: 100 GIDLAGDESLGET--PATKNHVMAFEALDQLHAERIGHGYHTLEDEELYDRVLKERIHLE 157

Query: 255 -HAYALAKHPLLLE----EVIKNDIGLEINIISNAVLSLVRD-VRNHPLSTFLSKGLPVV 416
                + K  + LE     V+     LE    S+ +   V    + HP+  F   G    
Sbjct: 158 VSGDRVLKESIQLEVIGDRVLIERFHLETCPTSSILTGAVPPPFKCHPILKFARDGANFS 217

Query: 417 ISSDDP 434
           ++SDDP
Sbjct: 218 LNSDDP 223


>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1091

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 189  NQFHRRGRSSPSSRWLPVTGVRILLKALPDPPVRLDRIQQ-KYR 61
            ++F+ RGR  PS   LPV    +L  A  + P    ++QQ +YR
Sbjct: 1038 HRFYERGRFDPSPSELPVANKHLLHIARYNRPGATSQVQQARYR 1081


>SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)
          Length = 217

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 144 ASESLDYFFHAGETDWLGTLTDENLMDAILLGAK 245
           A ES+D F    +    GT+ DE + + ++LG K
Sbjct: 106 AHESIDQFLQLAKPCLFGTIEDEMVRERLVLGCK 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,787
Number of Sequences: 59808
Number of extensions: 421151
Number of successful extensions: 1130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)