Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0732
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical p... 48 6e-06
U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U61947-4|AAO44914.1| 349|Caenorhabditis elegans Hypothetical pr... 34 0.085
U61947-3|AAB03130.2| 391|Caenorhabditis elegans Hypothetical pr... 34 0.085
Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z11505-2|CAA77585.1| 418|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF002197-4|AAD34659.1| 393|Caenorhabditis elegans Hypothetical ... 28 7.4
>U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical
protein C44B7.12 protein.
Length = 388
Score = 48.0 bits (109), Expect = 6e-06
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +3
Query: 84 LVGQEDLGEPLIEFAPQLLEASESLDYFFHAGETDWLGTLTDE--NLMDAILLGAKRIGH 257
+VG E G+P ++ +LL+ + F G T L + ++ D + L RIGH
Sbjct: 211 IVGVELSGDPHLD-GRRLLKLFVAARRFHGLGITIHLAEVLQNMADVEDYLNLRPDRIGH 269
Query: 258 AYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPVVISSDDPG 437
L P K I LEI + SN + RN + + +G+PV I +DD G
Sbjct: 270 GTFLHTDPYTEYLTNKYKIPLEICLSSNVYSKTTTNYRNSHFNYWRKRGVPVFICTDDKG 329
Query: 438 AWEAEPLTDDFYVAFV 485
LT+++Y A +
Sbjct: 330 VIPGATLTEEYYKAAI 345
>U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical
protein C34F11.3a protein.
Length = 740
Score = 43.2 bits (97), Expect = 2e-04
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 234 LGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPV 413
L ++ I H L K P+L IG+ ++ +SN SL + +PL +L KGL V
Sbjct: 579 LTSESIAHGILLRKVPVLQYLYYLTQIGIAMSPLSNN--SLFISYQRNPLPEYLQKGLNV 636
Query: 414 VISSDDP--GAWEAEPLTDDFYVAFVGAASXXXXXXXXXXXXXNSFTYSSLEDRQKIEAL 587
+S+DDP + E L ++F +A A NS S ED+ KI L
Sbjct: 637 SLSTDDPLQFHYTKEALMEEFSIA---AQVWKLSSCDMCELARNSVMQSGFEDKVKIHWL 693
>U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical
protein C34F11.3c protein.
Length = 803
Score = 43.2 bits (97), Expect = 2e-04
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 234 LGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPV 413
L ++ I H L K P+L IG+ ++ +SN SL + +PL +L KGL V
Sbjct: 642 LTSESIAHGILLRKVPVLQYLYYLTQIGIAMSPLSNN--SLFISYQRNPLPEYLQKGLNV 699
Query: 414 VISSDDP--GAWEAEPLTDDFYVAFVGAASXXXXXXXXXXXXXNSFTYSSLEDRQKIEAL 587
+S+DDP + E L ++F +A A NS S ED+ KI L
Sbjct: 700 SLSTDDPLQFHYTKEALMEEFSIA---AQVWKLSSCDMCELARNSVMQSGFEDKVKIHWL 756
>U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical
protein C34F11.3b protein.
Length = 764
Score = 43.2 bits (97), Expect = 2e-04
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 234 LGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPV 413
L ++ I H L K P+L IG+ ++ +SN SL + +PL +L KGL V
Sbjct: 603 LTSESIAHGILLRKVPVLQYLYYLTQIGIAMSPLSNN--SLFISYQRNPLPEYLQKGLNV 660
Query: 414 VISSDDP--GAWEAEPLTDDFYVAFVGAASXXXXXXXXXXXXXNSFTYSSLEDRQKIEAL 587
+S+DDP + E L ++F +A A NS S ED+ KI L
Sbjct: 661 SLSTDDPLQFHYTKEALMEEFSIA---AQVWKLSSCDMCELARNSVMQSGFEDKVKIHWL 717
>U61947-4|AAO44914.1| 349|Caenorhabditis elegans Hypothetical
protein C06G3.5b protein.
Length = 349
Score = 34.3 bits (75), Expect = 0.085
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 240 AKRIGHAYALAK-HPLLLEEVIKN-DIGLEINIISNAVLSLVR-DVRNHPLSTFLSKGLP 410
A+RIGH Y + + + LE + + ++ LE S+ + V D +NHP++ + +
Sbjct: 224 AERIGHGYRVMRDEEMYLEHFVNSKNVHLEACPYSSVMTGAVPLDWKNHPIARWAKDDVN 283
Query: 411 VVISSDDPGAWEAEPLTD 464
+S DDP ++ L++
Sbjct: 284 FSVSRDDPTCFDNSMLSE 301
>U61947-3|AAB03130.2| 391|Caenorhabditis elegans Hypothetical
protein C06G3.5a protein.
Length = 391
Score = 34.3 bits (75), Expect = 0.085
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 240 AKRIGHAYALAK-HPLLLEEVIKN-DIGLEINIISNAVLSLVR-DVRNHPLSTFLSKGLP 410
A+RIGH Y + + + LE + + ++ LE S+ + V D +NHP++ + +
Sbjct: 266 AERIGHGYRVMRDEEMYLEHFVNSKNVHLEACPYSSVMTGAVPLDWKNHPIARWAKDDVN 325
Query: 411 VVISSDDPGAWEAEPLTD 464
+S DDP ++ L++
Sbjct: 326 FSVSRDDPTCFDNSMLSE 343
>Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical
protein T04D3.5 protein.
Length = 300
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 464 RFLCCFCWSGQPTRRLKTTETV 529
R +C FC+ QPT RL T E V
Sbjct: 141 RMVCSFCYRAQPTHRLYTIEDV 162
>Z11505-2|CAA77585.1| 418|Caenorhabditis elegans Hypothetical
protein F59B2.3 protein.
Length = 418
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 114 LIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMD--AILLGAKRIGHAY 263
++ AP+L A E+++YF G T +G + + A+L GAK I H +
Sbjct: 195 IVTMAPELEGAQEAIEYFVSTGTTVSVGHSSAKLGPGEMAVLSGAKMITHLF 246
>AF002197-4|AAD34659.1| 393|Caenorhabditis elegans Hypothetical
protein F20H11.6 protein.
Length = 393
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -1
Query: 595 NLLSASIFWRSSSEL*VNEFNANCFSSLKSASRLAAPTKAT*KSSVKGSASHAPGSSLDI 416
+ L S+FW+ S L +A + S+ + T + S+ +G+ L I
Sbjct: 218 HFLRFSVFWQKSGRLDTPSTSATVSPHITSSLTQRSHTSSPASSASEGTVVPPRKKGLPI 277
Query: 415 TTGNPLDRNV 386
TTG+ + R V
Sbjct: 278 TTGSIVKRTV 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,567,851
Number of Sequences: 27780
Number of extensions: 312782
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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