Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0732
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate ...    42   3e-04
At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate ...    42   3e-04
At1g50590.1 68414.m05681 pirin, putative similar to SP|O00625 Pi...    31   0.97 
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    29   3.9  
At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative...    28   6.8  

>At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +3

Query: 195 GTLTDENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRN 374
           G   D + + A  L    I H   L K P+L        IGL ++ +SN   SL  D   
Sbjct: 661 GEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN--SLFLDYHR 718

Query: 375 HPLSTFLSKGLPVVISSDDPGA--WEAEPLTDDFYVA 479
           +P   F  +GL V +S+DDP       EPL +++ +A
Sbjct: 719 NPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIA 755


>At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate
           deaminase, putative similar to SP|P15274 AMP deaminase
           (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00962:
           Adenosine/AMP deaminase
          Length = 839

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +3

Query: 195 GTLTDENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRN 374
           G   D + + A  L    I H   L K P+L        IGL ++ +SN   SL  D   
Sbjct: 661 GEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN--SLFLDYHR 718

Query: 375 HPLSTFLSKGLPVVISSDDPGA--WEAEPLTDDFYVA 479
           +P   F  +GL V +S+DDP       EPL +++ +A
Sbjct: 719 NPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIA 755


>At1g50590.1 68414.m05681 pirin, putative similar to SP|O00625 Pirin
           {Homo sapiens}; contains Pfam profile PF02678: Pirin
          Length = 310

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 78  FDLVGQEDLGEPLIEFAPQLLEASESLD 161
           F LV  E +GEP+++F P ++   E +D
Sbjct: 253 FILVAGEPIGEPMVQFGPFVMNTQEEID 280


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 413 CYIKRRSRSMGGGTLDGRFLCCFC 484
           C +K+    +G   LDGRF C +C
Sbjct: 160 CGLKQDRYGIGSDDLDGRFYCAYC 183


>At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative
           strong similarity to SP|P49299 Citrate synthase,
           glyoxysomal precursor {Cucurbita maxima}; contains Pfam
           profile PF00285: Citrate synthase
          Length = 509

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +3

Query: 9   RVLSTYLQIAKDVKNDMPDIFAGFDLVGQEDLGEPLIEFAPQLLEASESLDYF 167
           RV   Y   AK +KN   ++F+   +VG++    PLIE A  L +A+ S DYF
Sbjct: 359 RVYKNYDPRAKVIKNLADEVFS---IVGKD----PLIEVAVALEKAALSDDYF 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,944,544
Number of Sequences: 28952
Number of extensions: 302827
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)