Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0731
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392... 29 3.0
01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709... 29 3.0
08_02_1030 - 23786760-23787812,23787891-23788319,23788410-237885... 29 5.2
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160... 29 5.2
03_01_0583 - 4321169-4321279,4321328-4321384,4321532-4321702,432... 28 6.9
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 28 9.1
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 28 9.1
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 28 9.1
>09_04_0189 +
15438538-15438591,15438671-15438891,15438982-15439214,
15439322-15439541,15440091-15440212,15441086-15441339,
15441425-15441532,15441622-15441828,15441929-15442213,
15442312-15442467
Length = 619
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 595 RENITWSKIAAVYCILRSTG*GXC*GSRRRAITRANHSTGCCNWLTSYT 741
R + T+ K+AA+ G G C S R + A H+ G ++L YT
Sbjct: 544 RRDCTYGKLAAMRLPKDVQGLGACEYSLERGVVHACHAGGVVHFLEGYT 592
>01_01_0900 +
7091970-7092068,7092175-7093131,7093210-7093968,
7094322-7094366
Length = 619
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 370 KRLQRMIETECGEEATCNSDTGVLSALRALCAALERKRP----EAFRHVARQATR 522
K+ Q+++ T CG+ TC + V++ R + A ++ +RP AFRH+ R
Sbjct: 60 KQKQKLLCTTCGKGHTCQA---VIARTRQMRAMIDARRPHQAHSAFRHLVDDGHR 111
>08_02_1030 -
23786760-23787812,23787891-23788319,23788410-23788526,
23788820-23789083
Length = 620
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 367 MKRLQRMIETECGEEATCNSDTGVLSALRALCAALERKRPE 489
+KR+ RM+ EC E T +D+G + AL L A ++K E
Sbjct: 362 VKRI-RMLSKECPENRTLIADSGGIPALIGLLACPDKKVQE 401
>01_07_0269 -
42414345-42415328,42415419-42415551,42415939-42416007,
42416459-42416672,42416785-42417040
Length = 551
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 246 PSYSCG-QAASHSCSGCARHHCAEPSLGAVKRRKRST 139
P CG Q + C GC+R C+ P + + KRR T
Sbjct: 28 PCEECGEQPWKYRCPGCSRLTCSLPCVQSHKRRTACT 64
>03_01_0583 -
4321169-4321279,4321328-4321384,4321532-4321702,
4321960-4322042,4322581-4322647,4322730-4322780,
4323203-4323265,4323363-4323413,4323500-4323556,
4324261-4324368
Length = 272
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/64 (18%), Positives = 33/64 (51%)
Frame = +2
Query: 377 FSV*SRLSVEKRLLVIVTPGYFLHSARYVRRWRESGRKHSVMSRGKRPGLLQLCYAQTLH 556
F + + +E++ ++ ++L +AR+ + W E+ + +++ PG Q + +H
Sbjct: 87 FLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILD--VVPGFEQAIQSYAIH 144
Query: 557 LQNL 568
+ +L
Sbjct: 145 VLSL 148
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 265 QVKPQIVRQGRALCLQYIKTQIRRSTTCVKKQIVMKRLQRMIETECGEEATCNSDTGVLS 444
Q KP + + +K +++ +T CVKK + +K L+ + EE N
Sbjct: 1292 QSKPSNIVANVTSFIPLVKPKLQPTTACVKKDVRVKALEAAEAAKRLEEKKQNE-----R 1346
Query: 445 ALRALCAALERKR 483
+R A LER+R
Sbjct: 1347 EMRKAAAKLERER 1359
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 255 GKVPSYSCGQAASHSCSGCAR-HHCAE 178
G P +CG A+ CSGC R +C++
Sbjct: 101 GGEPCAACGYIATKKCSGCKRVRYCSQ 127
>01_07_0238 + 42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -1
Query: 327 LCFNILQTKCTPLAYDLRFDLCMTGKVPSYSCGQAASHSCSGCARHHCAEPSLGAVKRRK 148
L IL KC A DL V S G+ +H+ + A +P+ A KRRK
Sbjct: 919 LIMEILIRKCGFDAIDLVTPEKYKAFVRSVEEGRKGNHNPADGAESEAQQPTQHAAKRRK 978
Query: 147 RS 142
RS
Sbjct: 979 RS 980
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,087,589
Number of Sequences: 37544
Number of extensions: 336871
Number of successful extensions: 972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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