Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0731
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    27   0.25 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.57 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.57 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.57 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.57 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 309 QTKCTPLAYDLRFDLCMTGKVPSYSC-GQAASH 214
           + + TP+ + L++  C+   +PSY+C G+ +S+
Sbjct: 28  ECQATPVIHFLQYPGCVPKPIPSYACRGRCSSY 60


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 9/46 (19%), Positives = 22/46 (47%)
 Frame = +2

Query: 455 RYVRRWRESGRKHSVMSRGKRPGLLQLCYAQTLHLQNLHLHSQDGS 592
           +Y   W+E  R  +   R + P ++     +T+H  N + ++ + +
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNRTIHNNNNYKYNYNNN 103


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 9/46 (19%), Positives = 22/46 (47%)
 Frame = +2

Query: 455 RYVRRWRESGRKHSVMSRGKRPGLLQLCYAQTLHLQNLHLHSQDGS 592
           +Y   W+E  R  +   R + P ++     +T+H  N + ++ + +
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNN 103


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 9/46 (19%), Positives = 22/46 (47%)
 Frame = +2

Query: 455 RYVRRWRESGRKHSVMSRGKRPGLLQLCYAQTLHLQNLHLHSQDGS 592
           +Y   W+E  R  +   R + P ++     +T+H  N + ++ + +
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNN 103


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 9/46 (19%), Positives = 22/46 (47%)
 Frame = +2

Query: 455 RYVRRWRESGRKHSVMSRGKRPGLLQLCYAQTLHLQNLHLHSQDGS 592
           +Y   W+E  R  +   R + P ++     +T+H  N + ++ + +
Sbjct: 58  KYRETWKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNN 103


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 267  LCMTGKVPSYSC--GQAASHSCSGCARHHCAEPSLGAVKRRKR 145
            +C T + P  SC  G  A  + S   + HC E +  A+K +KR
Sbjct: 1701 ICFTMR-PVVSCASGCTAVETKSKPYKFHCMEKNEAAMKLKKR 1742


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 228 QAASHSCSGCARH 190
           +A SHSC  C  H
Sbjct: 273 EAGSHSCEACPAH 285


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -3

Query: 520 WSLAARHDGMLPAAFSPTPHIARGVQKVPRCHYYK 416
           W  A RH+  L   F    ++   V  V    +YK
Sbjct: 548 WKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYK 582


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,220
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)