Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0731
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    31   0.62 
At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containi...    30   1.4  
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    29   3.3  
At5g07920.1 68418.m00916 diacylglycerol kinase 1 (DGK1) identica...    28   5.8  

>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +1

Query: 244 WYLASHTQVKP---QIVRQGRALCLQYIKTQIRRSTTCVKKQIVMKRLQRMIETE-CGEE 411
           WY    ++++    + V   RA  L Y + Q R S++C++ ++  ++    ++TE C +E
Sbjct: 445 WYRIDDSEIESVELEDVLSQRAYMLLYSRIQARSSSSCLRSEVKDEKKTDTLDTESCVKE 504

Query: 412 ATCNSDTGVLSALRALCAALE 474
              +S  G + +  +  A +E
Sbjct: 505 LVESSMVGAIESRSSTHATIE 525


>At4g26680.1 68417.m03844 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 242 DGTLPVIHRSNRRSY---AKGVHFVCNILKHRYEDQL 343
           DG   V+    RRS    ++ VH VCN LKH+ +DQL
Sbjct: 465 DGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQL 501


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 319 KTQIRRSTTCVKKQIVMKRLQRMIETECGEEATCNSDTGVLSALRALCAALERKRPEAFR 498
           + QIR++ T  KK++         E + G+E   N D  +L+ L  L   ++RK+ +A +
Sbjct: 318 RMQIRKALTPEKKEVAKP------EPDVGKEDEENEDDKLLNELEELTNTVDRKKKQAKK 371

Query: 499 HVARQATR 522
            +A++  +
Sbjct: 372 ILAKRRAK 379


>At5g07920.1 68418.m00916 diacylglycerol kinase 1 (DGK1) identical
           to diacylglycerol kinase 1 (Diglyceride kinase 1, DGK 1,
           DAG kinase 1) [Arabidopsis thaliana] SWISS-PROT:Q39017
          Length = 728

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 497 RNASGRFLSNAAHSARSAESTPVSLLQVASSPH 399
           RN SG FLS+  H A    ST ++ +++ S  +
Sbjct: 232 RNPSGGFLSSITHGANELASTALASIRIQSKKY 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,797
Number of Sequences: 28952
Number of extensions: 249942
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)