Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0729
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22M07 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q98PT0 Cluster: MALTODEXTRIN ABC TRANSPORTER PERMEASE P...    33   6.7  
UniRef50_Q23DA0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_A6R939 Cluster: Predicted protein; n=1; Ajellomyces cap...    33   6.7  

>UniRef50_Q22M07 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1054

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
 Frame = +2

Query: 242 LKKKDSYDQTINLNLGQINSQKKRYEIFKKNIEK--KSLSVSRFIVR-EIIY*KNKIMMF 412
           +K+KD   +T+ +N  QIN+ K+R+   ++ ++K  K +SV+R I + E+   K K   +
Sbjct: 244 IKEKDEITETLTINSKQINAIKQRHNSIEQKLQKDSKPVSVNRKIEQNELPQKKAKSKSY 303

Query: 413 INLRINVGQRESRSHR 460
            +  I     ++++H+
Sbjct: 304 HSTYIAKNSPDTKTHQ 319


>UniRef50_Q98PT0 Cluster: MALTODEXTRIN ABC TRANSPORTER PERMEASE
           PROTEIN MALC; n=1; Mycoplasma pulmonis|Rep: MALTODEXTRIN
           ABC TRANSPORTER PERMEASE PROTEIN MALC - Mycoplasma
           pulmonis
          Length = 1034

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +2

Query: 260 YDQTINLNLGQINSQK-KRYEIFKKNIEKKSLSVSRFIVREIIY*KNKIMMFINLRINVG 436
           +++ + LN+ +   +K K  EI KK I + +L +S F   EII+ KN +   I   +++G
Sbjct: 154 FEKLVYLNVAKKFYKKTKSLEITKKKITQINLDLSAF-ENEIIFEKNNLDFLIKTYLHLG 212

Query: 437 QRESRSHRRSLRVV 478
           Q+      +  ++V
Sbjct: 213 QKLKELQNKKTQIV 226


>UniRef50_Q23DA0 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1404

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 242  LKKKDSYDQTINLNLGQINSQKKRYEIFKKNIEKKSLSVSRFIVREIIY*KNKIMMFIN- 418
            +KK +  +QT +L L +   +K+   + +K + ++ L ++     EII  KNK    I+ 
Sbjct: 993  IKKSEQMEQTFDLRLSEYQQRKEESGLKRKQMVERELDIAN---EEIIQWKNKYQNLIDQ 1049

Query: 419  LRINVGQRESR 451
            +  NV Q +S+
Sbjct: 1050 MNKNVEQMQSQ 1060


>UniRef50_A6R939 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 541

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = -3

Query: 674 SRXLTVPATKSRRRRRKSLAESFAGRSEAYKPPHSIILMLKLLRDARRPITVLPRLILYC 495
           S  L++P++ SRR +RKS   + + + E  + P++ ++++++  D  RP   LP     C
Sbjct: 38  SEKLSMPSS-SRRMKRKSEVLAVSAQYEQIRKPNTHVIIVRIAHDYHRPKEPLPCTFSSC 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,975,325
Number of Sequences: 1657284
Number of extensions: 8793261
Number of successful extensions: 24522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24504
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)