Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0729
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0157 - 13556708-13556813,13556831-13557001,13559558-135597...    30   2.0  
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926...    30   2.0  
06_01_1000 - 7778907-7780721                                           29   4.7  
05_05_0175 + 22966151-22967614                                         28   6.2  

>10_07_0157 -
           13556708-13556813,13556831-13557001,13559558-13559757,
           13559809-13559835
          Length = 167

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -3

Query: 629 RKSLAESFA-GRSEAYKPP-HSIILMLKLLRDARRPITVLPRLILYCVCVK*LQP*ET 462
           RK+L E  A G S +Y+PP HS+I    LLR+    +  LP LIL    ++ LQ  E+
Sbjct: 31  RKALQEPRALGLSRSYEPPTHSVIGTQLLLRN-EDAVMFLPALILNLYLLEHLQKWES 87


>06_03_1475 -
           30391555-30391890,30391982-30392233,30392358-30392619,
           30393232-30393320,30393408-30393592,30393673-30393781,
           30393886-30393942,30394047-30394196
          Length = 479

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +2

Query: 266 QTINLNLGQINSQKKRYEIFKKNIEKKSLSVSRFIVREIIY*KNKIMMFINLRINVGQRE 445
           + IN  L +I+   K++E  KK     S   S+  +  +I   +  ++  +L  N GQ++
Sbjct: 382 EPINEKLHRISQNIKKHEKEKKKTNDDSCINSQQSLSRVISGIDDPLLNGSLSDNSGQKK 441

Query: 446 SRSHRR 463
           SR HRR
Sbjct: 442 SRKHRR 447


>06_01_1000 - 7778907-7780721
          Length = 604

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 641 RRRRRKSLAESFAGRSEAYKPPHSIILMLKLLRD 540
           RRRRR+SL  S +  S A   P +  L+ +LL D
Sbjct: 12  RRRRRRSLCSSSSAGSPAAAAPTAASLLAELLSD 45


>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 698 KTGTRTVRSRXLTVPATKSRRRRRKSLAESFAGRSEAYKPP 576
           KT  R  RS      AT S RRR +SL  + +GR +  +PP
Sbjct: 242 KTPRRGARSSKQDEEATASARRRAQSLRRA-SGREQPKQPP 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,440
Number of Sequences: 37544
Number of extensions: 237888
Number of successful extensions: 734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)