Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0729
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.8  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 115 YIKIKHFCTLRYI 153
           Y+K+KH  TL YI
Sbjct: 446 YVKVKHSATLGYI 458



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 514 GNTV--IGRRASRSSFNIKIIECGGLYASLLPANDS 615
           G T+  IGR+    S NIKII      + L P++DS
Sbjct: 217 GGTISGIGRKLKELSPNIKIIAVDPKGSILDPSSDS 252


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 257 SYDQTINLNLGQINSQKKRYEIFKKNIEKKSLSVSRFIVREII 385
           S   T  L+  +I+   K+   F  NI+K++LSV+  I +  +
Sbjct: 96  SVPNTSRLDKSEISLATKQACGFIDNIDKRNLSVTSMIQKRAL 138


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 27  SGRGRARPEGGCGSRG 74
           +GRG+ R  G  GSRG
Sbjct: 78  TGRGKGRGHGKGGSRG 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,031
Number of Sequences: 438
Number of extensions: 2560
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)