Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0728
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6IE02 Cluster: Mod(Mdg4)-heS00531; n=1; Bombyx mori|Re...    81   4e-14
UniRef50_Q17CD3 Cluster: Putative uncharacterized protein; n=1; ...    37   0.61 
UniRef50_Q1PUP2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  
UniRef50_UPI0000E4764A Cluster: PREDICTED: hypothetical protein;...    34   3.3  
UniRef50_A7AH02 Cluster: Putative uncharacterized protein; n=1; ...    34   4.3  
UniRef50_UPI0001555AE2 Cluster: PREDICTED: similar to KIAA1552 p...    33   5.7  
UniRef50_Q9VD04 Cluster: CG13845-PA; n=7; Sophophora|Rep: CG1384...    33   7.5  
UniRef50_Q6NP69 Cluster: LD30165p; n=8; Endopterygota|Rep: LD301...    33   7.5  
UniRef50_Q16WH6 Cluster: Predicted protein; n=1; Aedes aegypti|R...    33   7.5  

>UniRef50_Q6IE02 Cluster: Mod(Mdg4)-heS00531; n=1; Bombyx mori|Rep:
           Mod(Mdg4)-heS00531 - Bombyx mori (Silk moth)
          Length = 344

 Score = 80.6 bits (190), Expect = 4e-14
 Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
 Frame = +3

Query: 18  TDNDETNYGEDDSNMEMTGFDGSATGDVNISXXXXXXXXXXXXXFIPTIKGGKLLCLY-G 194
           T+NDETNYGEDDSNMEMTGFDGSATGDVNIS             F  T   G+ + +Y  
Sbjct: 239 TNNDETNYGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQDPFFGTSCRGRPVIVYQN 298

Query: 195 YTF--HREYGDEFRSYWRCS 248
           Y F  H++YG+  ++ WRC+
Sbjct: 299 YRFHLHQKYGE--KTSWRCA 316


>UniRef50_Q17CD3 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 282

 Score = 36.7 bits (81), Expect = 0.61
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 165 KGGKLLCLYGYTFHREYGDEFRSYWRCSNRLAFSCKCKAHII 290
           +G + +C YGYTF  E      + WRC    A   KCKA II
Sbjct: 9   RGRRQICYYGYTFEMEKERTGSTSWRCGQ--AKPLKCKARII 48


>UniRef50_Q1PUP2 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep: Putative
           uncharacterized protein - Candidatus Kuenenia
           stuttgartiensis
          Length = 480

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = -2

Query: 401 RLPTEDICIKQIYPLVLIFNFIIWGVIMSI--RYKYLSVDYVSFTFARKCKSIRTSPVAS 228
           R+ TED  IK+  PL+L++   +WG+I  +    K + + Y++  F   C    T    +
Sbjct: 103 RISTEDFQIKRYLPLILLY---LWGIISILWSTEKTMGIYYMAMFFIAICFFFLTIVTLN 159

Query: 227 EFVTIFTVECVSVQA*ELTAFYCWYKL 147
            F+ I       V    +++  C+Y L
Sbjct: 160 SFLKIKIAIAFFVGMGFVSSIVCYYSL 186


>UniRef50_UPI0000E4764A Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 155

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 165 KGGKLLCLYGYTFHREYGDEFRSYWRCSNR 254
           +GGK+L   GY + R    + R YWRC+ R
Sbjct: 23  RGGKVLTYGGYRYTRSNSSKTRLYWRCARR 52


>UniRef50_A7AH02 Cluster: Putative uncharacterized protein; n=1;
           Parabacteroides merdae ATCC 43184|Rep: Putative
           uncharacterized protein - Parabacteroides merdae ATCC
           43184
          Length = 139

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 242 SPVASEFVTIFTVECVSVQA*ELTAFYCWYKLTL---CIADCSTFTSRNINISSCRAIKT 72
           SPV    + +FT+EC+ +          WYK+T     IA CS F  + I IS   A++ 
Sbjct: 33  SPVTMVMLLLFTLECIHM------LLSTWYKITADGHLIAHCSIFPEKKIPISEISAVEV 86

Query: 71  S 69
           +
Sbjct: 87  T 87


>UniRef50_UPI0001555AE2 Cluster: PREDICTED: similar to KIAA1552
           protein; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           similar to KIAA1552 protein - Ornithorhynchus anatinus
          Length = 550

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 150 FIPTIKGGKLLCLYGYTFHREYGDEFRSYWRCSNRLAFSCKCKAHIIYGQ 299
           F+PT  GG  L    + + +E     + YWRC +   + C  +A +  GQ
Sbjct: 78  FLPTCYGGSFLVYDSFLYKKEKAIGNKVYWRCRDHADYPCSGRA-VTVGQ 126


>UniRef50_Q9VD04 Cluster: CG13845-PA; n=7; Sophophora|Rep:
           CG13845-PA - Drosophila melanogaster (Fruit fly)
          Length = 237

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 150 FIPTIKGGKLLCLYGYTFHREYGDEFRSYWRCSNRLAFSCKCKAHII-YGQIFIT 311
           F+ + +G  LL   G+TF  +Y  + + YW+C+    F+CK +      G I +T
Sbjct: 32  FMLSQRGKPLLVHDGHTFGIQYVRKDKKYWQCNLSRKFNCKARVTTTDTGDIIVT 86


>UniRef50_Q6NP69 Cluster: LD30165p; n=8; Endopterygota|Rep: LD30165p
           - Drosophila melanogaster (Fruit fly)
          Length = 1045

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 165 KGGKLLCLYGYTFH-REYGDEFRSYWRCSNRLAFSCKCKAHI 287
           KG +LLC+ GY +H +  G   R+YW C         CK+ I
Sbjct: 601 KGHELLCVDGYIYHAKNRGVISRNYWVCIKSRDPDINCKSRI 642


>UniRef50_Q16WH6 Cluster: Predicted protein; n=1; Aedes aegypti|Rep:
           Predicted protein - Aedes aegypti (Yellowfever mosquito)
          Length = 1345

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 165 KGGKLLCLYGYTFHREYGDEFRSYWRCSNR 254
           +GG +L L GY F+R    E   YW C NR
Sbjct: 12  RGGDMLYLDGYLFYRNKKVEDLHYWECRNR 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,078,089
Number of Sequences: 1657284
Number of extensions: 11841488
Number of successful extensions: 25595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25537
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)