Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0728
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    27   0.12 
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   8.0  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   8.0  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   8.0  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 616 KIVLQQSGNFLNVSLFQSQMVRSKN 542
           KI +QQSG F+N+   +  ++R KN
Sbjct: 122 KINVQQSGIFINLPFLEHNLIRLKN 146


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 563 PDGTFQKYY*KRKVDSV 513
           PDGT++K Y + + D V
Sbjct: 112 PDGTYKKRYFESQKDEV 128


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 338 IIWGVIMSIRYKYLSVDYVSFTFARKCKSIRTSPVASEFVTIF 210
           ++  VI+     YL+  Y+ F   +   S  TSP   +FV  F
Sbjct: 33  VLQTVILGTTCIYLTSLYIWFILTQMTFSGVTSPTIMKFVLSF 75


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 338 IIWGVIMSIRYKYLSVDYVSFTFARKCKSIRTSPVASEFVTIF 210
           ++  VI+     YL+  Y+ F   +   S  TSP   +FV  F
Sbjct: 33  VLQTVILGTTCIYLTSLYIWFILTQMTFSGVTSPTIMKFVLSF 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,763
Number of Sequences: 336
Number of extensions: 3514
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)