Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0728
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    29   0.94 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   5.0  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -2

Query: 614 DCVTAVRKFPECEFIPKPDGTFQKY--Y*KRKVDSVFFPSTCSWPLRAIPATLILVDELK 441
           DC++ ++KFPE E +   D     Y      K  + F  S    P+ +  A +I+ D  K
Sbjct: 66  DCISIIKKFPEIEILKLKDYDMFLYPSLSVAKQSAAFLES--KGPIDS--AEVIIYDATK 121

Query: 440 SERSTAQ*QDHVKRLPTEDICIKQIYPLV 354
             R      D   R  TE+I I Q+Y ++
Sbjct: 122 GLRKHLDSIDR-NRKYTEEIHIPQVYSVL 149


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 392  TEDICIKQIYPLVLIFNFIIWGVIMSIRYKYLSVDYVSF 276
            T +  +  I  L+LIF  ++W V++S+  K LS++ V F
Sbjct: 2172 TSNTPLWSIIILLLIFFIVVWAVLLSV-IKILSLNNVWF 2209


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 177 LLCLYGYTFHREYGDEFRSYWRCSNRLAFS 266
           L+C+   T H+ Y +EF   WR  + LA S
Sbjct: 396 LVCITCLTKHQYYDEEFADVWREIDTLANS 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,117
Number of Sequences: 5004
Number of extensions: 54419
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)