Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0728
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85) 33 0.33
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 33 0.33
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 32 0.43
SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6) 31 0.76
SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11) 31 1.3
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08) 29 4.0
SB_32458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)
Length = 604
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 266 RKCKSIRTSPVASEFVTIFTVECVSVQA*ELTAFYCWYKLTLCIADC-STFTSRNINISS 90
R+C+S+ S + V + EC SV EL+A+ C L +C S SR + +
Sbjct: 535 RECQSVELSAYECQSVELSAYECQSV---ELSAYEC-QSAELSAYECQSVSVSRAVRLRE 590
Query: 89 CRAIKTSHF 63
C++++ S +
Sbjct: 591 CQSVELSAY 599
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 170 AFYCWYKLTLCIADCSTFTSRNINISSCRAIKTSHFHIRIVLSVISFV 27
AFYC TLC+ C FT R ++ + + H+R+V + IS +
Sbjct: 677 AFYCSTIPTLCVMLCYIFTDRRLDQAVIFTVFAYFSHLRMVANYISAI 724
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = -2
Query: 326 VIMSIRYKY-----LSVDYVSFTFARKCKSIRTSPVASEF-VTIFTVECVS 192
VI+ I Y Y +S D +FTF KC+ + T +AS F VTI T C S
Sbjct: 564 VILGICYTYGDPHFVSFDGKAFTFGGKCQYLLTESLASGFSVTIDTAACSS 614
>SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)
Length = 353
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Frame = -2
Query: 272 FARKCKSIRTSPVASEFVTIFTVECVSV-------QA*ELTAFYCWYKLTLCIADC-STF 117
FA +C+S+ S + V + EC SV Q+ EL+A+ C L +C S
Sbjct: 95 FAYECQSVELSAYECQSVELSAYECQSVELSAYECQSVELSAYEC-QSAELSAYECQSVS 153
Query: 116 TSRNINISSCRAIKTSHF 63
SR + + C++++ S +
Sbjct: 154 VSRAVRLRECQSVELSAY 171
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 269 ARKCKSIRTSPVASEFVTIFTVECVSVQA*ELTAFYCWYKLTLCIADC-STFTSRNINIS 93
A +C+S+ S + V + EC SV EL+ + C + L +C S SR + +
Sbjct: 9 AYECQSVELSAYEYQSVELSAYECQSV---ELSGYEC-QSVELSAYECQSVSVSRAVRLR 64
Query: 92 SCRAIKTSHF 63
C++++ S +
Sbjct: 65 ECQSVELSAY 74
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -2
Query: 263 KCKSIRTSPVASEFVTIFTVECVSVQA*ELTAFYCWYKLTLCIADCSTFTSRNINISSCR 84
KC+S+ S + V +F EC SV EL+A+ C + L +C S ++ C+
Sbjct: 78 KCQSVELSAYECQSVELFAYECQSV---ELSAYEC-QSVELSAYECQ---SVELSAYECQ 130
Query: 83 AIKTSHF 63
+++ S +
Sbjct: 131 SVELSAY 137
>SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11)
Length = 406
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 170 AFYCWYKLTLCIADCSTFTSRNINISSCRAIKTSHFHIRIVLSVI 36
AFYC TLC+ C FT R ++ + + H+R+V + I
Sbjct: 16 AFYCSTIPTLCVMLCYIFTDRRLDQAVIFTVFAYFSHLRMVANYI 60
>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
Length = 363
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +1
Query: 511 KTLSTLRF**YFWNVPSGFGINSHSGNFRTAVTQSYFKRVSKS*INKLIITVTSTLLDEP 690
KTL T F YF VP+ IN V Y R + S +N ++ T+ +
Sbjct: 207 KTLVTATFLSYFCFVPTAVFINDFRNTEAYVVLACYCIRFANSLVNPVVYTLRIDGFKKA 266
Query: 691 XKAFACLERL 720
F C R+
Sbjct: 267 LVKFLCCSRV 276
>SB_32458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 21 DNDETNYGEDDSNMEMTGFDGSATGD 98
+ND+ +YG D N++ G DG GD
Sbjct: 108 NNDDDDYGGDGDNIDDDGDDGGGDGD 133
>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 149 LTLCIADCSTFTSRNINISSCRAIKTS-HFHIRIVLS-VISFVI 24
L LC+ STFT +I+I C A++ + I + V+SF++
Sbjct: 61 LGLCLCAVSTFTITSISIDRCLAVRLKMDYPITVTFKRVVSFIV 104
>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1603
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 27 DETNYGEDDSNMEMTGFDGSATGDVN 104
D +YG+DD + ++ DGS +G N
Sbjct: 302 DNVDYGDDDDDFDIDDDDGSGSGSGN 327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,874,871
Number of Sequences: 59808
Number of extensions: 379288
Number of successful extensions: 925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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