Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0728
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 29 4.7
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 29 4.7
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 29 4.7
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 29 4.7
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 29 4.7
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 29 4.7
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 29 4.7
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 29 4.7
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 29 4.7
DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian str... 28 8.1
AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical ... 28 8.1
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1603 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1662
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1588 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1647
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1636 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1695
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1595 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1654
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1595 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1654
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1603 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1662
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1636 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1695
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1588 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1647
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 432 SLGLELINQNECSWNSPKGPRASRREKNTIHLAFLVIFLERTIWLWNKLTFRKFPDCCNT 611
+LG+EL + ECS + P +AFL +F T WN + D C++
Sbjct: 1588 ALGVELFGKLECSEDHPCDGLGEHAHFKNFGMAFLTLFRIATGDNWNGIMKDALRDDCDS 1647
>DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian
stromal interaction molecule-1 protein.
Length = 530
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 70 LVLMALQLEMLIFLEVKVEQSAMHKVN 150
L +AL L LIFL V+ +Q A KVN
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVN 221
>AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical
protein Y57A10C.11 protein.
Length = 262
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -2
Query: 398 LPTEDICIKQIYPLVLIFNF------IIWGVIMSIRYKYLSVDYVSFTFA 267
+PT +C+ + PLV++ NF I+ +++ Y YL+V FA
Sbjct: 87 MPTAVVCLNILLPLVMVLNFYGSWFYILITILIYALYAYLAVGTTERFFA 136
>AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1c protein.
Length = 395
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 70 LVLMALQLEMLIFLEVKVEQSAMHKVN 150
L +AL L LIFL V+ +Q A KVN
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVN 221
>AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1a protein.
Length = 530
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 70 LVLMALQLEMLIFLEVKVEQSAMHKVN 150
L +AL L LIFL V+ +Q A KVN
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVN 221
>AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1b protein.
Length = 510
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 70 LVLMALQLEMLIFLEVKVEQSAMHKVN 150
L +AL L LIFL V+ +Q A KVN
Sbjct: 195 LAFLALLLTSLIFLYVRQKQKAQQKVN 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,529
Number of Sequences: 27780
Number of extensions: 297869
Number of successful extensions: 654
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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